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Medical Informatics

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Extracting drug-drug interactions with hybrid bidirectional gated recurrent unit and graph convolutional network.

Journal of biomedical informatics
Drug-drug interactions are critical in studying drug side effects. Thus, quickly and accurately identifying the relationship between drugs is necessary. Current methods for biomedical relation extraction include only the sequential information of sen...

Neural network-based approaches for biomedical relation classification: A review.

Journal of biomedical informatics
The explosive growth of biomedical literature has created a rich source of knowledge, such as that on protein-protein interactions (PPIs) and drug-drug interactions (DDIs), locked in unstructured free text. Biomedical relation classification aims to ...

Adversarial training based lattice LSTM for Chinese clinical named entity recognition.

Journal of biomedical informatics
Clinical named entity recognition (CNER), which intends to automatically detect clinical entities in electronic health record (EHR), is a committed step for further clinical text mining. Recently, more and more deep learning models are used to Chines...

Chinese clinical named entity recognition with radical-level feature and self-attention mechanism.

Journal of biomedical informatics
Named entity recognition is a fundamental and crucial task in medical natural language processing problems. In medical fields, Chinese clinical named entity recognition identifies boundaries and types of medical entities from unstructured text such a...

Ten years of knowledge representation for health care (2009-2018): Topics, trends, and challenges.

Artificial intelligence in medicine
BACKGROUND: In the last ten years, the international workshop on knowledge representation for health care (KR4HC) has hosted outstanding contributions of the artificial intelligence in medicine community pertaining to the formalization and representa...

Active deep learning for the identification of concepts and relations in electroencephalography reports.

Journal of biomedical informatics
The identification of medical concepts, their attributes and the relations between concepts in a large corpus of Electroencephalography (EEG) reports is a crucial step in the development of an EEG-specific patient cohort retrieval system. However, th...

ISeeU: Visually interpretable deep learning for mortality prediction inside the ICU.

Journal of biomedical informatics
To improve the performance of Intensive Care Units (ICUs), the field of bio-statistics has developed scores which try to predict the likelihood of negative outcomes. These help evaluate the effectiveness of treatments and clinical practice, and also ...

Contributions from the 2018 Literature on Bioinformatics and Translational Informatics.

Yearbook of medical informatics
OBJECTIVES: To summarize recent research and select the best papers published in 2018 in the field of Bioinformatics and Translational Informatics (BTI) for the corresponding section of the International Medical Informatics Association (IMIA) Yearboo...