AIMC Topic: Methylation

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ME-Class2 reveals context dependent regulatory roles for 5-hydroxymethylcytosine.

Nucleic acids research
Since the discovery of 5-hydroxymethylcytosine (5hmC) as a prominent DNA modification found in mammalian genomes, an emergent question has been what role this mark plays in gene regulation. 5hmC is hypothesized to function as an intermediate in the d...

Deep-2'-O-Me: Predicting 2'-O-methylation sites by Convolutional Neural Networks.

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
2'-O-methylation (2'-O-me) of ribose moiety is one of the significant and ubiquitous post-transcriptional RNA modifications which is vital for metabolism and functions of RNA. Although recent development of new technology (Nmseq) enabled biologists t...

Identifying RNA 5-methylcytosine sites via pseudo nucleotide compositions.

Molecular bioSystems
RNA 5-methylcytosine (mC) plays an important role in numerous biological processes. Accurate identification of the mC site is helpful for a better understanding of its biological functions. However, the drawbacks of the experimental methods available...

LncRNA ontology: inferring lncRNA functions based on chromatin states and expression patterns.

Oncotarget
Accumulating evidences suggest that long non-coding RNAs (lncRNAs) perform important functions. Genome-wide chromatin-states area rich source of information about cellular state, yielding insights beyond what is typically obtained by transcriptome pr...