AI Medical Compendium Topic:
Peptides

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New tools for MHC research from machine learning and predictive algorithms to the tumour immunopeptidome.

Immunology
At a time when immunology seeks to progress ever more rapidly from characterization of a microbial or tumour antigen to the immune correlates that may define protective T-cell immunity, there is a need for robust tools to enable accurate predictions ...

Structure-based prediction of protein- peptide binding regions using Random Forest.

Bioinformatics (Oxford, England)
MOTIVATION: Protein-peptide interactions are one of the most important biological interactions and play crucial role in many diseases including cancer. Therefore, knowledge of these interactions provides invaluable insights into all cellular processe...

An introduction to deep learning on biological sequence data: examples and solutions.

Bioinformatics (Oxford, England)
MOTIVATION: Deep neural network architectures such as convolutional and long short-term memory networks have become increasingly popular as machine learning tools during the recent years. The availability of greater computational resources, more data...

modlAMP: Python for antimicrobial peptides.

Bioinformatics (Oxford, England)
SUMMARY: We have implemented the lecular esign aboratory's nti icrobial eptides package ( ), a Python-based software package for the design, classification and visual representation of peptide data. modlAMP offers functions for molecular descriptor c...

HLA class I binding prediction via convolutional neural networks.

Bioinformatics (Oxford, England)
MOTIVATION: Many biological processes are governed by protein-ligand interactions. One such example is the recognition of self and non-self cells by the immune system. This immune response process is regulated by the major histocompatibility complex ...

[Clinical analysis of Cervus and Cucumis Polypeptide injection based on real world hospital information system].

Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia medica
To analyze the clinical application of Cervus and Cucumis Polypeptide injection in the real world, in order to define the characteristics of clinical drug use and correlation, and provide reference for risk management and further study for Cervus and...

An Evaluation on Different Machine Learning Algorithms for Classification and Prediction of Antifungal Peptides.

Medicinal chemistry (Shariqah (United Arab Emirates))
BACKGROUND: Fungi are an emerging threat in medicine and agriculture and current therapeutics have proved to be insufficient and toxic. This has led to an increased interest in peptide-based therapeutics, especially antifungal peptides (AFPs), being ...

[Enhancement of Coprinus cinereus peroxidase in Pichia pastoris by co-expression chaperone PDI and Ero1].

Sheng wu gong cheng xue bao = Chinese journal of biotechnology
The 1,095 bp gene encoding peroxidase from Coprinus cinereus was synthesized and integrated into the genome of Pichia pastoris with a highly inducible alcohol oxidase. The recombinant CiP (rCiP) fused with the a-mating factor per-pro leader sequence ...

[Collagen quantitation by detection of marker peptides with HPLC-MS].

Sheng wu gong cheng xue bao = Chinese journal of biotechnology
A method for quantitation of collagen was established by detecting marker peptide with high performance liquid chromatography-mass spectrometry (HPLC-MS). Theoretical marker peptides were selected by sequence comparison. Bovine collagen type I was di...