AIMC Topic: Plants

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PINC: A Tool for Non-Coding RNA Identification in Plants Based on an Automated Machine Learning Framework.

International journal of molecular sciences Oct 5, 2022
There is evidence that non-coding RNAs play significant roles in the regulation of nutrient homeostasis, development, and stress responses in plants. Accurate identification of ncRNAs is the first step in determining their function. While a number of...
Plants RNA, Untranslated Machine Learning
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iCREPCP: A deep learning-based web server for identifying base-resolution cis-regulatory elements within plant core promoters.

Plant communications Sep 28, 2022
Plants Promoter Regions, Genetic Deep Learning Regulatory Sequences, Nucleic Acid
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DeepPlnc: Bi-modal deep learning for highly accurate plant lncRNA discovery.

Genomics Aug 2, 2022
We present here a bi-modal CNN based deep-learning system, DeepPlnc, to identify plant lncRNAs with high accuracy while using sequence and structural properties. Unlike most of the existing software, it works accurately even in conditions with ambigu...
RNA, Long Noncoding Deep Learning Software Molecular Sequence Annotation Plants Transcriptome
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Unsupervised and semi-supervised learning: the next frontier in machine learning for plant systems biology.

The Plant journal : for cell and molecular biology Jul 27, 2022
Advances in high-throughput omics technologies are leading plant biology research into the era of big data. Machine learning (ML) performs an important role in plant systems biology because of its excellent performance and wide application in the ana...
Systems Biology Plants Algorithms Machine Learning Supervised Machine Learning
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bHLHDB: A next generation database of basic helix loop helix transcription factors based on deep learning model.

Journal of bioinformatics and computational biology Jul 25, 2022
The basic helix loop helix (bHLH) superfamily is a large and diverse protein family that plays a role in various vital functions in nearly all animals and plants. The bHLH proteins form one of the largest families of transcription factors found in pl...
Plants Amino Acid Sequence Basic Helix-Loop-Helix Transcription Factors Phylogeny Transcription Factors Deep Learning Animals
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Micronutrient seed priming: new insights in ameliorating heavy metal stress.

Environmental science and pollution research international Jul 4, 2022
Plants need to survive with changing environmental conditions, be it different accessibility to water or nutrients, or attack by insects or pathogens. Few of these changes, especially heavy metal stress, can become more stressful and needed strong co...
Metalloids Plants Metals, Heavy Germination Micronutrients Seeds
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Development of a system for the automated identification of herbarium specimens with high accuracy.

Scientific reports May 16, 2022
Herbarium specimens are dried plants mounted onto paper. They are used by a limited number of researchers, such as plant taxonomists, as a source of information on morphology and distribution. Recently, digitised herbarium specimens have begun to be ...
Plants Artificial Intelligence Japan Humans
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Selective chemical probes can untangle the complexity of the plant cell endomembrane system.

Current opinion in plant biology May 11, 2022
The endomembrane system is critical for plant growth and development and understanding its function and regulation is of great interest for plant biology research. Small-molecule targeting distinctive endomembrane components have proven powerful tool...
Artificial Intelligence Plant Cells Plants Phenotype Protein Transport
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Dandelion pappus morphing is actuated by radially patterned material swelling.

Nature communications May 6, 2022
Plants generate motion by absorbing and releasing water. Many Asteraceae plants, such as the dandelion, have a hairy pappus that can close depending on moisture levels to modify dispersal. Here we demonstrate the relationship between structure and fu...
Taraxacum Biomimetics Robotics Motion Plants
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Effects of nitrogen and phosphorus addition on growth and leaf nitrogen metabolism of alfalfa in alkaline soil in Yinchuan Plain of Hetao Basin.

PeerJ Apr 13, 2022
Alkaline soil is widely distributed in China. Its rational utilization is an effective measure to solve land shortage and improve the environment. Alfalfa is characterized by strong salt and alkali tolerance and high yield and protein content. Nitrog...
Nitrate Reductase Nitrogen Chlorophyll A Medicago sativa Transaminases Soil Amino Acids Phosphorus Plants
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