AIMC Topic: Programming Languages

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A Novel Method and Python Library for ECG Signal Quality Assessment.

Studies in health technology and informatics
Electrocardiogram (ECG) is one of the reference cardiovascular diagnostic exams. However, the ECG signal is very prone to being distorted through different sources of artifacts that can later interfere with the diagnostic. For this reason, signal qua...

A Comparison of LLMs for Use in Generating Synthetic Test Data for Automated Testing of a Patient-Focused, Survey-Based System.

AMIA ... Annual Symposium proceedings. AMIA Symposium
In the context of a patient-focused, survey-based system, we demonstrated the potential of generative AI to create custom synthetic data using 2 different large language models (GPT 3.5 and Flan T5-XL) in AWS and Azure environments. While we improved...

Statistical and Machine Learning Methods for Discovering Prognostic Biomarkers for Survival Outcomes.

Methods in molecular biology (Clifton, N.J.)
Discovering molecular biomarkers for predicting patient survival outcomes is an essential step toward improving prognosis and therapeutic decision-making in the treatment of severe diseases such as cancer. Due to the high-dimensionality nature of omi...

dsMTL: a computational framework for privacy-preserving, distributed multi-task machine learning.

Bioinformatics (Oxford, England)
MOTIVATION: In multi-cohort machine learning studies, it is critical to differentiate between effects that are reproducible across cohorts and those that are cohort-specific. Multi-task learning (MTL) is a machine learning approach that facilitates t...

Exploration of the Decision Model and Notation (DMN) Standard for Representation of Knowledge Bases Encoded in the Arden Syntax.

Studies in health technology and informatics
CONTEXT: Arden Syntax encodes knowledge as Medical Logic Modules (MLMs). Current work involves improvement of its representation of business processes.

Deep learning-enhanced, open-source eigenmode expansion.

Optics letters
We present an open-source eigenmode expansion (EME) software package entirely implemented in the Python programming language. Eigenmode expansion Python (EMEPy) utilizes artificial neural networks to reproduce electromagnetic eigenmode field profiles...

OCTID: a one-class learning-based Python package for tumor image detection.

Bioinformatics (Oxford, England)
MOTIVATION: Tumor tile selection is a necessary prerequisite in patch-based cancer whole slide image analysis, which is labor-intensive and requires expertise. Whole slides are annotated as tumor or tumor free, but tiles within a tumor slide are not....

Identification of pan-cancer Ras pathway activation with deep learning.

Briefings in bioinformatics
The identification of hidden responders is often an essential challenge in precision oncology. A recent attempt based on machine learning has been proposed for classifying aberrant pathway activity from multiomic cancer data. However, we note several...