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Rodentia

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Hippocampome.org: a knowledge base of neuron types in the rodent hippocampus.

eLife
Hippocampome.org is a comprehensive knowledge base of neuron types in the rodent hippocampal formation (dentate gyrus, CA3, CA2, CA1, subiculum, and entorhinal cortex). Although the hippocampal literature is remarkably information-rich, neuron proper...

Global and local excitation and inhibition shape the dynamics of the cortico-striatal-thalamo-cortical pathway.

Scientific reports
The cortico-striatal-thalamo-cortical (CSTC) pathway is a brain circuit that controls movement execution, habit formation and reward. Hyperactivity in the CSTC pathway is involved in obsessive compulsive disorder (OCD), a neuropsychiatric disorder ch...

Structured networks support sparse traveling waves in rodent somatosensory cortex.

Proceedings of the National Academy of Sciences of the United States of America
Neurons responding to different whiskers are spatially intermixed in the superficial layer 2/3 (L2/3) of the rodent barrel cortex, where a single whisker deflection activates a sparse, distributed neuronal population that spans multiple cortical colu...

DeepSqueak: a deep learning-based system for detection and analysis of ultrasonic vocalizations.

Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology
Rodents engage in social communication through a rich repertoire of ultrasonic vocalizations (USVs). Recording and analysis of USVs has broad utility during diverse behavioral tests and can be performed noninvasively in almost any rodent behavioral m...

Merging information in the entorhinal cortex: what can we learn from robotics experiments and modeling?

The Journal of experimental biology
Place recognition is a complex process involving idiothetic and allothetic information. In mammals, evidence suggests that visual information stemming from the temporal and parietal cortical areas ('what' and 'where' information) is merged at the lev...

A curated knowledgebase on endocrine disrupting chemicals and their biological systems-level perturbations.

The Science of the total environment
Human well-being can be affected by exposure to several chemicals in the environment. One such group is endocrine disrupting chemicals (EDCs) that can perturb the hormonal homeostasis leading to adverse health effects. In this work, we have developed...

A comprehensive knowledge base of synaptic electrophysiology in the rodent hippocampal formation.

Hippocampus
The cellular and synaptic architecture of the rodent hippocampus has been described in thousands of peer-reviewed publications. However, no human- or machine-readable public catalog of synaptic electrophysiology data exists for this or any other neur...

Deep learning improves automated rodent behavior recognition within a specific experimental setup.

Journal of neuroscience methods
Automated observation and analysis of rodent behavior is important to facilitate research progress in neuroscience and pharmacology. Available automated systems lack adaptivity and can benefit from advances in AI. In this work we compare a state-of-t...