AIMC Topic: Saccharomyces cerevisiae Proteins

Clear Filters Showing 41 to 50 of 50 articles

PARPAL: PARalog Protein redistribution using Abundance and Localization in yeast database.

G3 (Bethesda, Md.)
Whole-genome duplication (WGD) events are common across various organisms; however, the retention and evolution of WGD paralogs is not fully understood. Quantitative measure of protein redistribution in response to the deletion of their WGD paralog p...

Deep learning-driven imaging of cell division and cell growth across an entire eukaryotic life cycle.

Molecular biology of the cell
The life cycle of eukaryotic microorganisms involves complex transitions between states such as dormancy, mating, meiosis, and cell division, which are often studied independently from each other. Therefore, most microbial life cycles are theoretical...

Integrative approaches for predicting protein network perturbations through machine learning and structural characterization.

Journal of proteomics
Chromatin remodeling complexes, such as the Saccharomyces cerevisiae INO80 complex, exemplify how dynamic protein interaction networks govern cellular function through a balance of conserved structural modules and context-dependent functional partner...

Deep learning meets histones at the replication fork.

Cell
Epigenetic inheritance of heterochromatin requires transfer of parental H3-H4 tetramers to both daughter duplexes during replication. Three recent papers exploit yeast genetics coupled to inheritance assays and AlphaFold2-multimer predictions coupled...

Identification of Cell Cycle-Regulated Genes by Convolutional Neural Network.

Combinatorial chemistry & high throughput screening
BACKGROUND: The cell cycle-regulated genes express periodically with the cell cycle stages, and the identification and study of these genes can provide a deep understanding of the cell cycle process. Large false positives and low overlaps are big pro...

[Enhancement of Coprinus cinereus peroxidase in Pichia pastoris by co-expression chaperone PDI and Ero1].

Sheng wu gong cheng xue bao = Chinese journal of biotechnology
The 1,095 bp gene encoding peroxidase from Coprinus cinereus was synthesized and integrated into the genome of Pichia pastoris with a highly inducible alcohol oxidase. The recombinant CiP (rCiP) fused with the a-mating factor per-pro leader sequence ...

Semi-supervised prediction of gene regulatory networks using machine learning algorithms.

Journal of biosciences
Use of computational methods to predict gene regulatory networks (GRNs) from gene expression data is a challenging task. Many studies have been conducted using unsupervised methods to fulfill the task; however, such methods usually yield low predicti...

Exploiting ontology graph for predicting sparsely annotated gene function.

Bioinformatics (Oxford, England)
MOTIVATION: Systematically predicting gene (or protein) function based on molecular interaction networks has become an important tool in refining and enhancing the existing annotation catalogs, such as the Gene Ontology (GO) database. However, functi...

Yeast Proteome Dynamics from Single Cell Imaging and Automated Analysis.

Cell
Proteomics has proved invaluable in generating large-scale quantitative data; however, the development of systems approaches for examining the proteome in vivo has lagged behind. To evaluate protein abundance and localization on a proteome scale, we ...