AIMC Topic:
Software

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Efficient Computation Reduction in Bayesian Neural Networks Through Feature Decomposition and Memorization.

IEEE transactions on neural networks and learning systems
The Bayesian method is capable of capturing real-world uncertainties/incompleteness and properly addressing the overfitting issue faced by deep neural networks. In recent years, Bayesian neural networks (BNNs) have drawn tremendous attention to artif...

COVID-19 and digital transformation: developing an open experimental testbed for sustainable and innovative environments using Fuzzy Cognitive Maps.

F1000Research
This paper sketches a new approach using Fuzzy Cognitive Maps (FCMs) to operably map and simulate digital transformation in architecture and urban planning. Today these processes are poorly understood. Many current studies on digital transformation a...

Analysis of ultrasonic vocalizations from mice using computer vision and machine learning.

eLife
Mice emit ultrasonic vocalizations (USVs) that communicate socially relevant information. To detect and classify these USVs, here we describe VocalMat. VocalMat is a software that uses image-processing and differential geometry approaches to detect U...

Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox.

Genome biology
The human microbiome is increasingly mined for diagnostic and therapeutic biomarkers using machine learning (ML). However, metagenomics-specific software is scarce, and overoptimistic evaluation and limited cross-study generalization are prevailing i...

PyDiNet: Pyramid Dilated Network for medical image segmentation.

Neural networks : the official journal of the International Neural Network Society
Medical image segmentation is an important step in many generic applications such as population analysis and, more accessible, can be made into a crucial tool in diagnosis and treatment planning. Previous approaches are based on two main architecture...

EDock-ML: A web server for using ensemble docking with machine learning to aid drug discovery.

Protein science : a publication of the Protein Society
EDock-ML is a web server that facilitates the use of ensemble docking with machine learning to help decide whether a compound is worthwhile to be considered further in a drug discovery process. Ensemble docking provides an economical way to account f...

Time-frequency time-space LSTM for robust classification of physiological signals.

Scientific reports
Automated analysis of physiological time series is utilized for many clinical applications in medicine and life sciences. Long short-term memory (LSTM) is a deep recurrent neural network architecture used for classification of time-series data. Here ...

Combined embedding model for MiRNA-disease association prediction.

BMC bioinformatics
BACKGROUND: Cumulative evidence from biological experiments has confirmed that miRNAs have significant roles to diagnose and treat complex diseases. However, traditional medical experiments have limitations in time-consuming and high cost so that the...

Protocol for a reproducible experimental survey on biomedical sentence similarity.

PloS one
Measuring semantic similarity between sentences is a significant task in the fields of Natural Language Processing (NLP), Information Retrieval (IR), and biomedical text mining. For this reason, the proposal of sentence similarity methods for the bio...

Improved Protein-Ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference.

Journal of chemical information and modeling
Predicting accurate protein-ligand binding affinities is an important task in drug discovery but remains a challenge even with computationally expensive biophysics-based energy scoring methods and state-of-the-art deep learning approaches. Despite th...