AIMC Topic: Software

Clear Filters Showing 211 to 220 of 3675 articles

HybProm: An attention-assisted hybrid CNN-BiLSTM model for the interpretable prediction of DNA promoter.

Methods (San Diego, Calif.)
Promoter prediction is essential for analyzing gene structures, understanding regulatory networks, transcription mechanisms, and precisely controlling gene expression. Recently, computational and deep learning methods for promoter prediction have gai...

Machine learning models for segmentation and classification of cyanobacterial cells.

Photosynthesis research
Timelapse microscopy has recently been employed to study the metabolism and physiology of cyanobacteria at the single-cell level. However, the identification of individual cells in brightfield images remains a significant challenge. Traditional inten...

Machine Learning-Based Bioactivity Classification of Natural Products Using LC-MS/MS Metabolomics.

Journal of natural products
The rediscovery of known drug classes represents a major challenge in natural products drug discovery. Compound rediscovery inhibits the ability of researchers to explore novel natural products and wastes significant amounts of time and resources. Th...

Med-ImageTools: An open-source Python package for robust data processing pipelines and curating medical imaging data.

F1000Research
BACKGROUND: Machine learning and AI promise to revolutionize the way we leverage medical imaging data for improving care but require large datasets to train computational models that can be implemented in clinical practice. However, processing large ...

Towards robotic Laboratory Automation Plug & Play: LAPP reference implementation with the TIAGo mobile manipulator.

SLAS technology
Laboratory automation with mobile manipulators presents a promising avenue for enhancing efficiency and reducing the dependency on human activity in laboratory workflows. To achieve seamless integration, the Laboratory Automation Plag & Play concept ...

DeepPrep: an accelerated, scalable and robust pipeline for neuroimaging preprocessing empowered by deep learning.

Nature methods
Neuroimaging has entered the era of big data. However, the advancement of preprocessing pipelines falls behind the rapid expansion of data volume, causing substantial computational challenges. Here we present DeepPrep, a pipeline empowered by deep le...

FIRM image analysis: A machine learning workflow for quantifying extracellular matrix components from electron microscopy images.

PloS one
The extracellular matrix (ECM) is a complex network of biomolecules that plays an integral role in the structure, processes, and signaling mechanisms of cells and tissues. Identifying and quantifying changes in these matrix components provides insigh...

Zygomatic Osteotomy surgery design software based on skull CT scans - Self-supervised algo reduces workload.

Journal of cranio-maxillo-facial surgery : official publication of the European Association for Cranio-Maxillo-Facial Surgery
BACKGROUND: The morphology of the zygomatic complex significantly influences facial appearance, leading to a focus on zygomatic osteotomy. The current technique, the "L-shaped" zygomatic osteotomy, requires a small incision and preoperative osteotomy...

Learning Phenotype Associated Signature in Spatial Transcriptomics with PASSAGE.

Small methods
Spatially resolved transcriptomics (SRT) is poised to advance the understanding of cellular organization within complex tissues under various physiological and pathological conditions at unprecedented resolution. Despite the development of numerous c...

Leveraging public AI tools to explore systems biology resources in mathematical modeling.

NPJ systems biology and applications
Predictive mathematical modeling is an essential part of systems biology and is interconnected with information management. Systems biology information is often stored in specialized formats to facilitate data storage and analysis. These formats are ...