AIMC Topic: Software

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Rapid and accurate identification of ribosomal RNA sequences via deep learning.

Nucleic acids research
Advances in transcriptomic and translatomic techniques enable in-depth studies of RNA activity profiles and RNA-based regulatory mechanisms. Ribosomal RNA (rRNA) sequences are highly abundant among cellular RNA, but if the target sequences do not inc...

Bibliometric Analysis of Chatbots in Health-Trend Shifts and Advancements in Artificial Intelligence for Personalized Conversational Agents.

Studies in health technology and informatics
Bibliometric analysis provides a summary for research reported in scientific literature. This can highlight pattens and trends in academic research areas, and assist in research directions. Recent growing requirements for efficient communications and...

VTag: a semi-supervised pipeline for tracking pig activity with a single top-view camera.

Journal of animal science
Precision livestock farming has become an important research focus with the rising demand of meat production in the swine industry. Currently, the farming practice is widely conducted by the technology of computer vision (CV), which automates monitor...

Deep Learning Methods for Detecting Side Effects of Cancer Chemotherapies Reported in a Remote Monitoring Web Application.

Studies in health technology and informatics
The objective of our work was to develop deep learning methods for extracting and normalizing patient-reported free-text side effects in a cancer chemotherapy side effect remote monitoring web application. The F-measure was 0.79 for the medical conce...

CDS-Compare: A Web Application for Machine Learning Assisted Curation of Clinical Order Sets.

Studies in health technology and informatics
Order sets that adhere to disease-specific guidelines have been shown to increase clinician efficiency and patient safety but curating these order sets, particularly for consistency across multiple sites, is difficult and time consuming. We created s...

Development of an Architecture to Implement Machine Learning Based Risk Prediction in Clinical Routine: A Service-Oriented Approach.

Studies in health technology and informatics
BACKGROUND: Patients at risk of developing a disease have to be identified at an early stage to enable prevention. One way of early detection is the use of machine learning based prediction models trained on electronic health records.

Context-aware learning for cancer cell nucleus recognition in pathology images.

Bioinformatics (Oxford, England)
MOTIVATION: Nucleus identification supports many quantitative analysis studies that rely on nuclei positions or categories. Contextual information in pathology images refers to information near the to-be-recognized cell, which can be very helpful for...

3DGT-DDI: 3D graph and text based neural network for drug-drug interaction prediction.

Briefings in bioinformatics
MOTIVATION: Drug-drug interactions (DDIs) occur during the combination of drugs. Identifying potential DDI helps us to study the mechanism behind the combination medication or adverse reactions so as to avoid the side effects. Although many artificia...

An efficient curriculum learning-based strategy for molecular graph learning.

Briefings in bioinformatics
Computational methods have been widely applied to resolve various core issues in drug discovery, such as molecular property prediction. In recent years, a data-driven computational method-deep learning had achieved a number of impressive successes in...

An inductive graph neural network model for compound-protein interaction prediction based on a homogeneous graph.

Briefings in bioinformatics
Identifying the potential compound-protein interactions (CPIs) plays an essential role in drug development. The computational approaches for CPI prediction can reduce time and costs of experimental methods and have benefited from the continuously imp...