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Fast Rule-based NER in SpaCy for Chest Radiography Reports with CheXpert's 14 Categories.

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
Chest X-ray imaging is widely used in medical examinations, with 2 billion performed globally annually. Interpreting X-ray images is time-consuming, prompting the development of AI-assisted systems. Generating a large set of high-quality labeled imag...

Towards Non-Invasive Swallowing Assessment: an AI-Powered Interface for Swallowing Kinematic Analysis using High-Resolution Cervical Auscultation.

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
Swallowing is a pivotal physiological function for human sustenance and hydration. Dysfunctions, termed dysphagia, necessitate prompt and precise diagnosis. Videofluoroscopic swallowing studies (VFSS) remain the gold standard for swallowing assessmen...

Artificial intelligence-enabled lipid droplets quantification: Comparative analysis of NIS-elements Segment.ai and ZeroCostDL4Mic StarDist networks.

Methods (San Diego, Calif.)
Lipid droplets (LDs) are dynamic organelles that are present in almost all cell types, with a particularly high prevalence in adipocytes. The phenotype of LDs in these cells reflects their maturity, metabolic activity and function. Although LDs quant...

A Systematic Study of Popular Software Packages and AI/ML Models for Calibrating In Situ Air Quality Data: An Example with Purple Air Sensors.

Sensors (Basel, Switzerland)
Accurate air pollution monitoring is critical to understand and mitigate the impacts of air pollution on human health and ecosystems. Due to the limited number and geographical coverage of advanced, highly accurate sensors monitoring air pollutants, ...

PredIDR2: Improving accuracy of protein intrinsic disorder prediction by updating deep convolutional neural network and supplementing DisProt data.

International journal of biological macromolecules
Intrinsically disordered proteins (IDPs) or regions (IDRs) are widespread in proteomes, and involved in several important biological processes and implicated in many diseases. Many computational methods for IDR prediction are being developed to decre...

MAEST: accurately spatial domain detection in spatial transcriptomics with graph masked autoencoder.

Briefings in bioinformatics
Spatial transcriptomics (ST) technology provides gene expression profiles with spatial context, offering critical insights into cellular interactions and tissue architecture. A core task in ST is spatial domain identification, which involves detectin...

SeizyML: An Application for Semi-Automated Seizure Detection Using Interpretable Machine Learning Models.

Neuroinformatics
Despite the vast number of publications reporting seizures and the reliance of the field on accurate seizure detection, there is a lack of open-source software tools in the scientific community for automating seizure detection based on electrographic...

Artificial intelligence-driven 3D MRI of lumbosacral nerve root anomalies: accuracy, incidence, and clinical utility.

Neuroradiology
PURPOSE: Lumbosacral nerve root anomalies are relatively rare but can be a risk factor for intraoperative nerve injury. However, it is often difficult to evaluate them with preoperative imaging. We developed a software that automatically generates th...

EPIPDLF: a pretrained deep learning framework for predicting enhancer-promoter interactions.

Bioinformatics (Oxford, England)
MOTIVATION: Enhancers and promoters, as regulatory DNA elements, play pivotal roles in gene expression, homeostasis, and disease development across various biological processes. With advancing research, it has been uncovered that distal enhancers may...

AgeML: Age Modeling With Machine Learning.

IEEE journal of biomedical and health informatics
An approach to age modeling involves the supervised prediction of age using machine learning from subject features. The derived age metrics are used to study the relationship between healthy and pathological aging in multiple body systems, as well as...