AIMC Topic: Supervised Machine Learning

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An EM-based semi-supervised deep learning approach for semantic segmentation of histopathological images from radical prostatectomies.

Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society
Automated Gleason grading is an important preliminary step for quantitative histopathological feature extraction. Different from the traditional task of classifying small pre-selected homogeneous regions, semantic segmentation provides pixel-wise Gle...

Iterative multi-path tracking for video and volume segmentation with sparse point supervision.

Medical image analysis
Recent machine learning strategies for segmentation tasks have shown great ability when trained on large pixel-wise annotated image datasets. It remains a major challenge however to aggregate such datasets, as the time and monetary cost associated wi...

A novel logistic regression model combining semi-supervised learning and active learning for disease classification.

Scientific reports
Traditional supervised learning classifier needs a lot of labeled samples to achieve good performance, however in many biological datasets there is only a small size of labeled samples and the remaining samples are unlabeled. Labeling these unlabeled...

Predictive pollen-based biome modeling using machine learning.

PloS one
This paper investigates suitability of supervised machine learning classification methods for classification of biomes using pollen datasets. We assign modern pollen samples from Africa and Arabia to five biome classes using a previously published Af...

Adaptive non-negative projective semi-supervised learning for inductive classification.

Neural networks : the official journal of the International Neural Network Society
We discuss the inductive classification problem by proposing a joint framework termed Adaptive Non-negative Projective Semi-Supervised Learning (ANP-SSL). Specifically, ANP-SSL integrates the adaptive inductive label propagation, adaptive reconstruct...

A step towards intelligent EBSD microscopy: machine-learning prediction of twin activity in MgAZ31.

Journal of microscopy
UNLABELLED: Although microscopy is often treated as a quasi-static exercise for obtaining a snapshot of events and structure, it is clear that a more dynamic approach, involving real-time decision making for guiding the investigation process, may pro...

Weakly-Supervised Convolutional Neural Network Architecture for Predicting Protein-DNA Binding.

IEEE/ACM transactions on computational biology and bioinformatics
Although convolutional neural networks (CNN) have outperformed conventional methods in predicting the sequence specificities of protein-DNA binding in recent years, they do not take full advantage of the intrinsic weakly-supervised information of DNA...

Mining heterogeneous networks with topological features constructed from patient-contributed content for pharmacovigilance.

Artificial intelligence in medicine
Drug safety, also called pharmacovigilance, represents a serious health problem all over the world. Adverse drug reactions (ADRs) and drug-drug interactions (DDIs) are two important issues in pharmacovigilance, and how to detect drug safety signals h...

Supervised machine learning outperforms taxonomy-based environmental DNA metabarcoding applied to biomonitoring.

Molecular ecology resources
Biodiversity monitoring is the standard for environmental impact assessment of anthropogenic activities. Several recent studies showed that high-throughput amplicon sequencing of environmental DNA (eDNA metabarcoding) could overcome many limitations ...