AIMC Topic: Whole Genome Sequencing

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The Kipoi repository accelerates community exchange and reuse of predictive models for genomics.

Nature biotechnology Jun 1, 2019
Humans Machine Learning Databases, Factual Genomics Whole Genome Sequencing Genome, Human Gene Editing
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Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.

Nucleic acids research Jan 8, 2019
The Human Phenotype Ontology (HPO)-a standardized vocabulary of phenotypic abnormalities associated with 7000+ diseases-is used by thousands of researchers, clinicians, informaticians and electronic health record systems around the world. Its detaile...
Humans Phenotype Genetic Predisposition to Disease Computational Biology Databases, Genetic Internet Whole Genome Sequencing Knowledge Bases Genetic Variation Biological Ontologies Rare Diseases Congenital Abnormalities
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Outgroup Machine Learning Approach Identifies Single Nucleotide Variants in Noncoding DNA Associated with Autism Spectrum Disorder.

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing Jan 1, 2019
Autism spectrum disorder (ASD) is a heritable neurodevelopmental disorder affecting 1 in 59 children. While noncoding genetic variation has been shown to play a major role in many complex disorders, the contribution of these regions to ASD susceptibi...
Humans Machine Learning Phenotype Autism Spectrum Disorder Female Male Case-Control Studies Cohort Studies Child Gene Regulatory Networks Genetic Predisposition to Disease Polymorphism, Single Nucleotide Genetic Association Studies Computational Biology Logistic Models MicroRNAs DNA Whole Genome Sequencing Genetic Variation CpG Islands RNA, Untranslated Microsatellite Repeats Supranuclear Palsy, Progressive
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A pan-genome-based machine learning approach for predicting antimicrobial resistance activities of the Escherichia coli strains.

Bioinformatics (Oxford, England) Jul 1, 2018
MOTIVATION: Antimicrobial resistance (AMR) is becoming a huge problem in both developed and developing countries, and identifying strains resistant or susceptible to certain antibiotics is essential in fighting against antibiotic-resistant pathogens....
Machine Learning Anti-Bacterial Agents Drug Resistance, Bacterial Escherichia coli Whole Genome Sequencing Genome, Bacterial
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