Gastroenterology

Latest AI and machine learning research in gastroenterology for healthcare professionals.

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Multi-gene biomarkers reveal spatial organization and subpopulation-specific damage response in intrahepatic biliary epithelial cells

Background & Aims: Intrahepatic biliary epithelial cell (BEC) heterogeneity remains challenging to define. Here, we sought to identify BEC subpopulations and biomarkers in mouse liver. Methods: We performed scRNA-seq on Sox9EGFP+ liver epithelium from mice subjected to bile duct ligation (BDL) and sham controls. A machine learning algorithm, NSForest, identified minimal, multi-gene signatures for ...

3DLAND: 3D Lesion Abdominal Anomaly Localization Dataset

Existing medical imaging datasets for abdominal CT often lack three-dimensional annotations, multi-organ coverage, or precise lesion-to-organ associations, hindering robust representation learning and clinical applications. To address this gap, we introduce 3DLAND, a large-scale benchmark dataset comprising over 6,000 contrast-enhanced CT volumes with over 20,000 high-fidelity 3D lesion annotation...

Feb 13 2026 2602.12820v1
A custom phenotypic profile for Fanconi anemia: Addressing gaps in existing disease annotations

Fanconi anemia (FA) is a rare genetic disorder of impaired DNA repair characterized by progressive bone marrow failure, congenital malformations, and ...

Network-based integration of gene expression and DNA methylation identifies prognostic biomarkers for early-stage pancreatic cancer

Pancreatic ductal adenocarcinoma remains one of the most lethal malignancies, largely due to the absence of reliable early stage biomarkers. Here, we ...

LLM-based reconstruction of longitudinal clinical trajectories in chronic liver disease.

Background: Liver cancer primarily develops in patients with chronic liver disease (CLD), yet most cases are diagnosed at an advanced stage with poor ...

DUCK-Net: Automated deep learning segmentation of Ductular Reaction in murine liver injury captures multicellular niche dynamics from H&E morphology

Ductular Reactions (DRs) are dynamic and complex multicellular responses that occur as a result of various hepatic injuries. Precise identification an...

Beyond Calibration: Confounding Pathology Limits Foundation Model Specificity in Abdominal Trauma CT

Purpose: Translating foundation models into clinical practice requires evaluating their performance under compound distribution shift, where severe cl...

Feb 10 2026 2602.10359v1
Semi-supervised Liver Segmentation and Patch-based Fibrosis Staging with Registration-aided Multi-parametric MRI

Liver fibrosis poses a substantial challenge in clinical practice, emphasizing the necessity for precise liver segmentation and accurate disease stagi...

Feb 10 2026 2602.09686v1
Bladder Vessel Segmentation using a Hybrid Attention-Convolution Framework

Urinary bladder cancer surveillance requires tracking tumor sites across repeated interventions, yet the deformable and hollow bladder lacks stable la...

Feb 10 2026 2602.09949v1
Open-Source Offline-Deployable Retrieval-Augmented Large Language Model for Assisting Pancreatic Cancer Staging

Purpose: Large language models (LLMs) are increasingly applied in radiology, but key challenges remain, including data leakage from cloud-based system...

A ML-framework for the discovery of next-generation IBD targets using a harmonized single-cell atlas of patient tissue

Target discovery for IBD has traditionally relied on genetic associations, which lack the cellular resolution needed to identify novel, actionable, ce...

A Causal Machine Learning Framework for Treatment Personalization in Clinical Trials: Application to Ulcerative Colitis

Randomized controlled trials estimate average treatment effects, but treatment response heterogeneity motivates personalized approaches. A critical qu...

Feb 9 2026 2602.08171v1
RealSynCol: a high-fidelity synthetic colon dataset for 3D reconstruction applications

Deep learning has the potential to improve colonoscopy by enabling 3D reconstruction of the colon, providing a comprehensive view of mucosal surfaces ...

Feb 9 2026 2602.08397v1
Reliable Mislabel Detection for Video Capsule Endoscopy Data

The classification performance of deep neural networks relies strongly on access to large, accurately annotated datasets. In medical imaging, however,...

Feb 6 2026 2602.06938v1
Towards Segmenting the Invisible: An End-to-End Registration and Segmentation Framework for Weakly Supervised Tumour Analysis

Liver tumour ablation presents a significant clinical challenge: whilst tumours are clearly visible on pre-operative MRI, they are often effectively i...

Feb 5 2026 2602.05453v1
Fast Organ-of-Origin Classification for Digital Pathology Quality Control

Digitizing large histopathology archives requires processing millions of scanned whole slide images that must be validated rapidly. Automated organ-of...

Enabling Real-Time Colonoscopic Polyp Segmentation on Commodity CPUs via Ultra-Lightweight Architecture

Early detection of colorectal cancer hinges on real-time, accurate polyp identification and resection. Yet current high-precision segmentation models ...

Feb 4 2026 2602.04381v1
XtraLight-MedMamba for Classification of Neoplastic Tubular Adenomas

Accurate risk stratification of precancerous polyps during routine colonoscopy screenings is essential for lowering the risk of developing colorectal ...

Feb 4 2026 2602.04819v1
Prediction of Mutations and Outcome in Gastrointestinal Stromal Tumors with Deep Learning: A Multicenter, Multinational Study

Background: Gastrointestinal stromal tumor (GIST) is the most common gastrointestinal mesenchymal tumor, driven by tyrosine-protein kinase KIT and pla...

Machine Learning Guided Optimization of an Oral Microemulsion System: A Bayesian Optimization Approach

Oral microemulsions are one drug delivery system often implemented to improve intestinal permeability and oral bioavailability of poorly-water soluble...

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