Genetics

Latest AI and machine learning research in genetics for healthcare professionals.

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Deciphering the molecular landscape of Sjögren's disease, mucosa-associated lymphoid tissue lymphoma, and thyroid cancer: unraveling the complexities of disease mechanisms and diagnostic biomarkers.

BACKGROUND: Sjögren's disease (SjD), mucosa-associated lymphoid tissue lymphoma (MALT lymphoma), and thyroid cancer (THCA) are clinically distinct yet immunologically intertwined diseases characterized by chronic inflammation and aberrant immune activation. However, the shared molecular basis linking autoimmunity and oncogenesis remains poorly defined. METHODS: We performed an integrative transcri...

Jan 18 2026 41548166

Controlling gene expression using AI designed Cis-regulatory elements.

Cis-regulatory elements (CREs) play a crucial role in regulating gene expression by controlling transcription, making the understanding and design of these elements essential for the advancement of biology. Traditional approaches often rely on empirical rules and iterative experimentation, which can be time-consuming and labor-intensive. Recent advances in deep learning have begun to influence thi...

Jan 18 2026 41554183
Integrating GC-MS, high-throughput sequencing, and machine learning to elucidate flavor development and microbial succession in Italian-style dry-cured ham.

This study investigated effects of ripening on physicochemical, aroma profiles, and microbial succession in Italian-style dry-cured ham (ISDCH). Resul...

Jan 17 2026 41763773
Morphological characterization of a novel model of steatohepatitis in the FAH-/- pig.

Metabolic dysfunction-associated steatohepatitis (MASH) is a global health care burden. Appropriate large animal models mimicking the main MASH charac...

Jan 17 2026 41546493
A prognostic signature of ferroptosis and lipid metabolism related genes predicts survival and immunotherapy response in hepatocellular carcinoma.

BACKGROUND: Hepatocellular carcinoma (HCC) is a common and aggressive form of cancer. There is an interplay between ferroptosis and lipid metabolism i...

Jan 17 2026 41546728
Precision breeding in a changing climate: unlocking resilience through omics and gene editing.

Climate change, rising global food demand, and shrinking resources require transformative innovations in crop breeding. This review outlines recent ad...

Jan 17 2026 41546796
Machine Learning-Based Identification of Exosome-Associated Diagnostic Biomarkers in Acute Myocardial Infarction and in Silico Drug Prioritization.

BACKGROUND: Acute myocardial infarction (AMI) is a major global health burden, with current diagnostic biomarkers often limited by delayed elevation a...

Jan 17 2026 41546812
Whole-genome sequencing and comparative genomics reveal antimicrobial potential and adaptive traits of Bacillus velezensis AM12.

The global rise of antimicrobial resistance has intensified the demand for novel antimicrobial agents with broad-spectrum efficacy and unique mechanis...

Jan 17 2026 41546830
Lactylation-driven gene signatures define breast cancer prognosis: a predictive model and insights into immune microenvironment dynamics.

BACKGROUND: Breast cancer is a leading cause of cancer-related mortality worldwide, with poor prognosis largely due to its invasive and metastatic nat...

Jan 17 2026 41547876
Gene Modification: Exploring the potential in treating kidney diseases.

Chronic kidney disease (CKD) is a leading cause of death worldwide. Currently available drugs slow but do not cure or prevent progression to end-stage...

Jan 17 2026 41554351
scPlantAnnotate: an accurate and robust transformer-based model for plant cell type annotation.

INTRODUCTION: Accurate cell type annotation remains a major bottleneck in plant single-cell RNA sequencing (scRNA-seq), where existing tools are often...

Jan 17 2026 41554477
Construction of a diagnostic model for tuberculosis based on long non-coding RNA.

BACKGROUND: The World Health Organization encourages the development of novel diagnostic tools based on 'non-sputum' samples to meet global goals for ...

Jan 16 2026 41543364
Activating the SDF-1/CXCR4 axis: Notoginsenoside R1-Functionalized zinc scaffolds accelerate fracture healing and angiogenesis in diabetic osteoporosis.

Effective treatment of diabetic osteoporotic fractures (DOF) requires biomaterials capable of promoting vascularized bone regeneration. A biodegradabl...

Jan 16 2026 41579467
Graph-Agnostic Linear Transformers.

Graph Transformers (GTs), as emerging foundational encoders for graph-structured data, have shown promising performance due to the integration of loca...

Jan 16 2026 41576559
Predicting epistasis across proteins by structural logic.

Accurately predicting the phenotypic consequences of genetic variation is a major challenge for precision medicine. The problem is exacerbated by epis...

Jan 16 2026 41543897
Multiomics Profiling of T-cell Leukemia and Lymphoma Enables Targeted Therapeutic Discovery.

UNLABELLED: T-cell leukemias and lymphomas (TCL) form a heterogeneous group of rare and often aggressive malignancies. Because of the rarity and heter...

Jan 16 2026 41166698
PANTHER Score: Protein-Affinity for Nucleic Target-binding, Hybridization, and Energy Regression.

Although protein-RNA interactions are crucial for many biological processes, predicting their binding free energies (ΔG) is a challenging task due to ...

Jan 16 2026 41339092
The SynMall resource for characterizing the functional impact of synonymous variation.

Synonymous single-nucleotide variants (sSNVs) are increasingly recognized as contributors to disease, yet existing variant annotation databases offer ...

Jan 16 2026 41407553
Cancer genome profiling in sarcomas: current status and future perspectives in Japan.

INTRODUCTION: Sarcomas are rare, molecularly diverse malignancies that challenge accurate diagnosis and effective therapy. Japan has implemented natio...

Jan 16 2026 41543043
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