Genetics

Latest AI and machine learning research in genetics for healthcare professionals.

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Multiple Trait Covariance Association Test Identifies Gene Ontology Categories Associated with Chill Coma Recovery Time in Drosophila melanogaster.

The genomic best linear unbiased prediction (GBLUP) model has proven to be useful for prediction of complex traits as well as estimation of population genetic parameters. Improved inference and prediction accuracy of GBLUP may be achieved by identifying genomic regions enriched for causal genetic variants. We aimed at searching for patterns in GBLUP-derived single-marker statistics, by including t...

May 25 2017 28546557

and cell-based analyses reveal strong divergence between prediction and observation of T-cell-recognized tumor antigen T-cell epitopes.

Tumor exomes provide comprehensive information on mutated, overexpressed genes and aberrant splicing, which can be exploited for personalized cancer immunotherapy. Of particular interest are mutated tumor antigen T-cell epitopes, because neoepitope-specific T cells often are tumoricidal. However, identifying tumor-specific T-cell epitopes is a major challenge. A widely used strategy relies on init...

May 23 2017 28536262
Bacterial Virus Ontology; Coordinating across Databases.

Bacterial viruses, also called bacteriophages, display a great genetic diversity and utilize unique processes for infecting and reproducing within a h...

May 23 2017 28545254
Machine learning for epigenetics and future medical applications.

Understanding epigenetic processes holds immense promise for medical applications. Advances in Machine Learning (ML) are critical to realize this prom...

May 19 2017 28524769
NFPscanner: a webtool for knowledge-based deciphering of biomedical networks.

BACKGROUND: Many biological pathways have been created to represent different types of knowledge, such as genetic interactions, metabolic reactions, a...

May 18 2017 28521733
Systematic Prediction of the Impacts of Mutations in MicroRNA Seed Sequences.

MicroRNAs are a class of small non-coding RNAs that are involved in many important biological processes and the dysfunction of microRNA has been assoc...

May 18 2017 28637929
Precision Medicine: Genomic Profiles to Individualize Therapy.

Precision medicine is the application of genotypic and Omics biomarkers to determine the most appropriate, outcome-driven therapy for individual patie...

May 17 2017 28527522
Automatic Segmentation of Kidneys using Deep Learning for Total Kidney Volume Quantification in Autosomal Dominant Polycystic Kidney Disease.

Autosomal Dominant Polycystic Kidney Disease (ADPKD) is the most common inherited disorder of the kidneys. It is characterized by enlargement of the k...

May 17 2017 28515418
Allium cepa root tip assay in assessment of toxicity of magnesium oxide nanoparticles and microparticles.

Allium cepa bioassay had been used from decades for the assessment of toxicants and their harmful effects on environment as well as human health. Magn...

May 12 2017 29628079
Label-free isolation of prostate circulating tumor cells using Vortex microfluidic technology.

There has been increased interest in utilizing non-invasive "liquid biopsies" to identify biomarkers for cancer prognosis and monitoring, and to isola...

May 8 2017 29872702
Geminivirus data warehouse: a database enriched with machine learning approaches.

BACKGROUND: The Geminiviridae family encompasses a group of single-stranded DNA viruses with twinned and quasi-isometric virions, which infect a wide ...

May 5 2017 28476106
Biological standards for the Knowledge-Based BioEconomy: What is at stake.

The contribution of life sciences to the Knowledge-Based Bioeconomy (KBBE) asks for the transition of contemporary, gene-based biotechnology from bein...

May 4 2017 28479235
Model-enabled gene search (MEGS) allows fast and direct discovery of enzymatic and transport gene functions in the marine bacterium .

Whereas genomes can be rapidly sequenced, the functions of many genes are incompletely or erroneously annotated because of a lack of experimental evid...

Apr 26 2017 28446608
Differential transcriptome analysis supports Rhodnius montenegrensis and Rhodnius robustus (Hemiptera, Reduviidae, Triatominae) as distinct species.

Chagas disease is one of the main parasitic diseases found in Latin America and it is estimated that between six and seven million people are infected...

Apr 13 2017 28406967
DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining.

Noncoding RNAs (ncRNAs), particularly microRNAs (miRNAs) and long ncRNAs (lncRNAs), are important players in diseases and emerge as novel drug targets...

Apr 7 2017 28387604
SNPPhenA: a corpus for extracting ranked associations of single-nucleotide polymorphisms and phenotypes from literature.

BACKGROUND: Single Nucleotide Polymorphisms (SNPs) are among the most important types of genetic variations influencing common diseases and phenotypes...

Apr 7 2017 28388928
A sensitive species-specific reverse transcription real-time PCR method for detection of and .

As the global burden of malaria decreases and countries strive towards disease elimination, there is a greater demand for sensitive diagnostics to tar...

Apr 6 2017 29774283
Node-based differential network analysis in genomics.

Gene dependency networks often undergo changes in response to different conditions. Understanding how these networks change across two conditions is a...

Apr 4 2017 28389083
An improved chaotic fruit fly optimization based on a mutation strategy for simultaneous feature selection and parameter optimization for SVM and its applications.

This paper proposes a new support vector machine (SVM) optimization scheme based on an improved chaotic fly optimization algorithm (FOA) with a mutati...

Apr 3 2017 28369096
Identification of transcription factors that may reprogram lung adenocarcinoma.

BACKGROUND: Lung adenocarcinoma is one of most threatening disease to human health. Although many efforts have been devoted to its genetic study, few ...

Apr 1 2017 28377053
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