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Subcategories: Genetics

Showing 8338-8358 of 11,255 articles

SHAP zero Explains Biological Sequence Models with Near-zero Marginal Cost for Future Queries

The growing adoption of machine learning models for biological sequences has intensified the need ...

Oct 2024 http://arxiv.org/abs/2410.19236v4

Simultaneously Infer Cell Pseudotime,Velocity Field and Gene Interaction from Multi-Branch scRNA-seq Data with scPN

Modeling cellular dynamics from single-cell RNA sequencing (scRNA-seq) data is critical for unders...

Oct 2024 http://arxiv.org/abs/2410.18394v1

Uncovering the Genetic Basis of Glioblastoma Heterogeneity through Multimodal Analysis of Whole Slide Images and RNA Sequencing Data

Glioblastoma is a highly aggressive form of brain cancer characterized by rapid progression and po...

Oct 2024 http://arxiv.org/abs/2410.18710v3

A Surrogate Model for Quay Crane Scheduling Problem

In ports, a variety of tasks are carried out, and scheduling these tasks is crucial due to its sig...

Oct 2024 http://arxiv.org/abs/2411.03324v1

DNAHLM -- DNA sequence and Human Language mixed large language Model

There are already many DNA large language models, but most of them still follow traditional uses, ...

Oct 2024 http://arxiv.org/abs/2410.16917v2

Privacy-hardened and hallucination-resistant synthetic data generation with logic-solvers

Machine-generated data is a valuable resource for training Artificial Intelligence algorithms, eva...

Oct 2024 http://arxiv.org/abs/2410.16705v1

DNA Language Model and Interpretable Graph Neural Network Identify Genes and Pathways Involved in Rare Diseases

Identification of causal genes and pathways is a critical step for understanding the genetic under...

Oct 2024 http://arxiv.org/abs/2410.15367v1

DEL-Ranking: Ranking-Correction Denoising Framework for Elucidating Molecular Affinities in DNA-Encoded Libraries

DNA-encoded library (DEL) screening has revolutionized the detection of protein-ligand interaction...

Oct 2024 http://arxiv.org/abs/2410.14946v2

Digital Humanities in the TIME-US Project: Richness and Contribution of Interdisciplinary Methods for Labour History

In 2015, the Annales journal, traditionally open to interdisciplinary approaches in history, refer...

Oct 2024 http://arxiv.org/abs/2410.14222v1

Estimating the Causal Effects of T Cell Receptors

A central question in human immunology is how a patient's repertoire of T cells impacts disease. H...

Oct 2024 http://arxiv.org/abs/2410.14127v1

BSM: Small but Powerful Biological Sequence Model for Genes and Proteins

Modeling biological sequences such as DNA, RNA, and proteins is crucial for understanding complex ...

Oct 2024 http://arxiv.org/abs/2410.11499v1

PANACEA: Towards Influence-driven Profiling of Drug Target Combinations in Cancer Signaling Networks

Data profiling has garnered increasing attention within the data science community, primarily focu...

Oct 2024 http://arxiv.org/abs/2410.11458v1

SGUQ: Staged Graph Convolution Neural Network for Alzheimer's Disease Diagnosis using Multi-Omics Data

Alzheimer's disease (AD) is a chronic neurodegenerative disorder and the leading cause of dementia...

Oct 2024 http://arxiv.org/abs/2410.11046v1

Lower-dimensional projections of cellular expression improves cell type classification from single-cell RNA sequencing

Single-cell RNA sequencing (scRNA-seq) enables the study of cellular diversity at single cell leve...

Oct 2024 http://arxiv.org/abs/2410.09964v1

KinDEL: DNA-Encoded Library Dataset for Kinase Inhibitors

DNA-Encoded Libraries (DEL) are combinatorial small molecule libraries that offer an efficient way...

Oct 2024 http://arxiv.org/abs/2410.08938v1

Artificial intelligence techniques in inherited retinal diseases: A review

Inherited retinal diseases (IRDs) are a diverse group of genetic disorders that lead to progressiv...

Oct 2024 http://arxiv.org/abs/2410.09105v1

A mechanistically interpretable neural network for regulatory genomics

Deep neural networks excel in mapping genomic DNA sequences to associated readouts (e.g., protein-...

Oct 2024 http://arxiv.org/abs/2410.06211v1

Beyond the Alphabet: Deep Signal Embedding for Enhanced DNA Clustering

The emerging field of DNA storage employs strands of DNA bases (A/T/C/G) as a storage medium for d...

Oct 2024 http://arxiv.org/abs/2410.06188v2

Assumption-Lean Post-Integrated Inference with Negative Control Outcomes

Data integration methods aim to extract low-dimensional embeddings from high-dimensional outcomes ...

Oct 2024 http://arxiv.org/abs/2410.04996v2

Comparative Analysis of Multi-Omics Integration Using Advanced Graph Neural Networks for Cancer Classification

Multi-omics data is increasingly being utilized to advance computational methods for cancer classi...

Oct 2024 http://arxiv.org/abs/2410.05325v1

BadCM: Invisible Backdoor Attack Against Cross-Modal Learning

Despite remarkable successes in unimodal learning tasks, backdoor attacks against cross-modal lear...

Oct 2024 http://arxiv.org/abs/2410.02182v1