Genetics

Latest AI and machine learning research in genetics for healthcare professionals.

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Inferring Historical Introgression with Deep Learning.

Resolving phylogenetic relationships among taxa remains a challenge in the era of big data due to th...

Nov 2023 37257491
ORI-Explorer: a unified cell-specific tool for origin of replication sites prediction by feature fusion.

MOTIVATION: The origins of replication sites (ORIs) are precise regions inside the DNA sequence wher...

Nov 2023 37929975
SSLpheno: a self-supervised learning approach for gene-phenotype association prediction using protein-protein interactions and gene ontology data.

MOTIVATION: Medical genomics faces significant challenges in interpreting disease phenotype and gene...

Nov 2023 37941450
ReGeNNe: genetic pathway-based deep neural network using canonical correlation regularizer for disease prediction.

MOTIVATION: Common human diseases result from the interplay of genes and their biologically associat...

Nov 2023 37963055
Ensemble-GNN: federated ensemble learning with graph neural networks for disease module discovery and classification.

SUMMARY: Federated learning enables collaboration in medicine, where data is scattered across multip...

Nov 2023 37988152
Inference of Coalescence Times and Variant Ages Using Convolutional Neural Networks.

Accurate inference of the time to the most recent common ancestor (TMRCA) between pairs of individua...

Oct 2023 37738175
DeepCCI: a deep learning framework for identifying cell-cell interactions from single-cell RNA sequencing data.

MOTIVATION: Cell-cell interactions (CCIs) play critical roles in many biological processes such as c...

Oct 2023 37740953
Facilitating the Molecular Diagnosis of Rare Genetic Disorders Through Facial Phenotypic Scores.

With recent advances in computer vision, many applications based on artificial intelligence have bee...

Oct 2023 37812136
GOWDL: gene ontology-driven wide and deep learning model for cell typing of scRNA-seq data.

Single-cell RNA-sequencing (scRNA-seq) allows for obtaining genomic and transcriptomic profiles of i...

Sep 2023 37756593
Benchmarking deep learning methods for predicting CRISPR/Cas9 sgRNA on- and off-target activities.

In silico design of single guide RNA (sgRNA) plays a critical role in clustered regularly interspace...

Sep 2023 37775147
Accurately identifying nucleic-acid-binding sites through geometric graph learning on language model predicted structures.

The interactions between nucleic acids and proteins are important in diverse biological processes. T...

Sep 2023 37824738
Application of deep learning in cancer epigenetics through DNA methylation analysis.

DNA methylation is a fundamental epigenetic modification involved in various biological processes an...

Sep 2023 37985455
scDeepInsight: a supervised cell-type identification method for scRNA-seq data with deep learning.

Annotation of cell-types is a critical step in the analysis of single-cell RNA sequencing (scRNA-seq...

Sep 2023 37523217
DeepICSH: a complex deep learning framework for identifying cell-specific silencers and their strength from the human genome.

Silencers are noncoding DNA sequence fragments located on the genome that suppress gene expression. ...

Sep 2023 37643374
HEAP: a task adaptive-based explainable deep learning framework for enhancer activity prediction.

Enhancers are crucial cis-regulatory elements that control gene expression in a cell-type-specific m...

Sep 2023 37539835
ETLD: an encoder-transformation layer-decoder architecture for protein contact and mutation effects prediction.

The latent features extracted from the multiple sequence alignments (MSAs) of homologous protein fam...

Sep 2023 37598423
Deep learning-based activity recognition and fine motor identification using 2D skeletons of cynomolgus monkeys.

Video-based action recognition is becoming a vital tool in clinical research and neuroscientific stu...

Sep 2023 37721106
iDeLUCS: a deep learning interactive tool for alignment-free clustering of DNA sequences.

SUMMARY: We present an interactive Deep Learning-based software tool for Unsupervised Clustering of ...

Sep 2023 37589603
[Not Available].

Advancing our understanding of complex diseases necessitates an interdisciplinary dialogue beyond ar...

Sep 2023 37529990
Chatbot Artificial Intelligence for Genetic Cancer Risk Assessment and Counseling: A Systematic Review and Meta-Analysis.

PURPOSE: Most individuals with a hereditary cancer syndrome are unaware of their genetic status to u...

Sep 2023 37934933
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