Genetics

Latest AI and machine learning research in genetics for healthcare professionals.

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Using discrete- and continuous-time machine learning models (Nnet, CoxNet, GLMnet) to explore sex and age differences in stroke prediction among hypertensive individuals

Stroke is one of the leading causes of death and long-term disability globally. Several studies have investigated the incidence and predictors of stroke in the healthy population; only a few have specifically focused on stroke risk prediction among individuals with hypertension. Given that hypertension is the most common modifiable risk factor for stroke, this represents an important research area...

Data-driven modelling of tau pathology reveals distinct progressive supranuclear palsy subtypes

Progressive supranuclear palsy (PSP) is a heterogeneous neurodegenerative disease characterised by the accumulation of misfolded 4-repeat tau within neurones and glial cells. There is limited longitudinal data on pathologically confirmed PSP patients with phenotypes other than classical Richardson’s syndrome (RS), and the pathomechanisms responsible for the broad variability in clinical phenotype ...

Artificial Intelligence-Enabled Precision Medicine Reveals Prognostic Impact of TGF-Beta Pathway Alterations in FOLFOX-Treated Early-Onset Colorectal Cancer Among Disproportionately Affected Populations

Early-onset colorectal cancer (EOCRC; <50 years) incidence is increasing most rapidly among Hispanic/Latino (H/L) populations. While the transforming ...

Concordant and discordant gene expression signatures of twin placentas in the setting of preeclampsia

Multifetal pregnancies are associated with increased risk for preeclampsia (PreE), but the underlying pathogenesis may differ from singleton gestation...

Acute myeloid leukemia risk stratification in younger and older patients through transcriptomic machine learning models

Acute Myeloid Leukemia (AML) is a genetically and clinically heterogeneous disease that can develop at any age. While AML incidence increases with age...

LLM-based data extraction for a large cancer registry, the Ontario Hereditary Cancer Research Network

Manual data extraction from genomic lab reports for on-line registries and databases is time-consuming for human resources such as clinical research c...

Artificial Intelligence-Guided Molecular Determinants of PI3K Pathway Alterations in Early-Onset Colorectal Cancer Among High-Risk Groups Receiving FOLFOX

Early-onset colorectal cancer (EOCRC), defined as diagnosis before age 50, is rising rapidly and disproportionately affects high-risk populations, par...

Analysis of Genome-Wide Cell-Free DNA Fragment Length Distributions in Colorectal Cancer

Each piece of cell-free DNA (cfDNA) has a length determined by the exact metabolic conditions in the cell it belonged to at the time of cell death. Th...

Whole-genome sequencing analysis of left ventricular structure and sphericity in 80,000 people

Sphericity is a measurement of how closely an object approximates a globe. The sphericity of the blood pool of the left ventricle (LV), is an emerging...

Multi-organ AI Endophenotypes Chart the Heterogeneity of Pan-disease in the Brain, Eye, and Heart

Disease heterogeneity and commonality pose significant challenges to precision medicine, as traditional approaches frequently focus on single disease ...

Integration of Gene Expression and Digital Histology to Predict Treatment-Specific Responses in Breast Cancer

Deep learning models applied to digital histology can predict gene expression signatures (GES) and offer a low-cost, rapidly available alternative to ...

Epigenetic patient stratification reveals a sub-endotype of type 2 asthma with altered B-cell response

Despite biomarker-guided treatment strategies, clinical outcomes among patients with type 2 (T2)-high asthma remain heterogeneous, with some patients ...

MyGESig: a population-specific gene signature improves survival prediction in Malaysian breast cancer patients

Accurate prognostic models are essential for guiding treatment decisions and improving patient outcomes in breast cancer. To achieve this, population-...

Altered microbial carbohydrate metabolism is associated with anxiety and gastrointestinal symptoms in patients with Generalized Anxiety Disorder

Generalized anxiety disorder (GAD) is a common psychiatric condition, with unknown etiology and pathophysiology. Recent studies have suggested alterat...

Refining the genetic landscape of anophthalmia and microphthalmia: a comprehensive framework with deep learning and updated gene panels

Anophthalmia and microphthalmia (A/M) are rare congenital eye disorders with a low molecular diagnosis rate, which limits clinical management and gene...

Leveraging Open-Source Large Language Models to Identify Undiagnosed Patients with Rare Genetic Aortopathies

Rare genetic aortopathies are frequently undiagnosed due to phenotypic heterogeneity, and delayed diagnosis can lead to fatal cardiac outcomes. While ...

Aligning computational pathology with clinical practice for colorectal cancer

Pathology reporting of colorectal cancer (CRC) follows the International Collaboration on Cancer Reporting (ICCR) guidelines which define a set of 25 ...

From Sequences to Strategies: Early Detection of New SARS-CoV-2 Variants via Genetic Distance to Reduce Hospitalizations

The COVID-19 pandemic highlighted the critical need for robust methods to monitor viral evolution and detect emerging variants of concern (VOCs). Trad...

Scalable Deep Learning of Histology Images Reveals Genetic and Phenotypic Determinants of Adipocyte Hypertrophy

White adipose tissue dysfunction has emerged as a critical factor in cardiometabolic disease development, yet the cellular microstructure and genetic ...

Advancing Human Population Genomics with DNA Foundation Models

DNA foundation models offer a new approach to interpret genetic variation, but their potential in population-scale genomics remains untapped. We intro...

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