Genetics

Latest AI and machine learning research in genetics for healthcare professionals.

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Optimal dosing of anti-cancer treatment under drug-induced plasticity

While cancer has traditionally been considered a genetic disease, mounting evidence indicates an important role for non-genetic (epigenetic) mechanisms. Common anti-cancer drugs have recently been observed to induce the adoption of reversible drug-tolerant cell states, thereby accelerating the evolution of drug resistance. Determining how to optimally balance the competing goals of killing the t...

Stochastic Model of siRNA Endosomal Escape Mediated by Fusogenic Peptides in OVCAR-3

Gene silencing via small interfering RNA (siRNA) represents a transformative tool in cancer therapy, offering specificity and reduced off-target effects compared to conventional treatments. A crucial step in siRNA-based therapies is endosomal escape, the release of siRNA from endosomes into the cytoplasm. Quantifying endosomal escape is challenging due to the dynamic nature of the process and li...

Motif Caller: Sequence Reconstruction for Motif-Based DNA Storage

DNA data storage is rapidly gaining traction as a long-term data archival solution, primarily due to its exceptional durability. Retrieving stored d...

GraphSeqLM: A Unified Graph Language Framework for Omic Graph Learning

The integration of multi-omic data is pivotal for understanding complex diseases, but its high dimensionality and noise present significant challeng...

Neuromorphic Spiking Neural Network Based Classification of COVID-19 Spike Sequences

The availability of SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) virus data post-COVID has reached exponentially to an enormous magn...

AI-Enhanced Sensemaking: Exploring the Design of a Generative AI-Based Assistant to Support Genetic Professionals

Generative AI has the potential to transform knowledge work, but further research is needed to understand how knowledge workers envision using and i...

LeviTor: 3D Trajectory Oriented Image-to-Video Synthesis

The intuitive nature of drag-based interaction has led to its growing adoption for controlling object trajectories in image-to-video synthesis. Stil...

Towards a mathematical framework for modelling cell fate dynamics

An adult human body is made up of some 30 to 40 trillion cells, all of which stem from a single fertilized egg cell. The process by which the right ...

GREGoR: Accelerating Genomics for Rare Diseases

Rare diseases are collectively common, affecting approximately one in twenty individuals worldwide. In recent years, rapid progress has been made in...

Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA

Foundation models have made significant strides in understanding the genomic language of DNA sequences. However, previous models typically adopt the...

Artificial Intelligence for Central Dogma-Centric Multi-Omics: Challenges and Breakthroughs

With the rapid development of high-throughput sequencing platforms, an increasing number of omics technologies, such as genomics, metabolomics, and ...

Predicting the Original Appearance of Damaged Historical Documents

Historical documents encompass a wealth of cultural treasures but suffer from severe damages including character missing, paper damage, and ink eros...

DLSOM: A Deep learning-based strategy for liver cancer subtyping

Liver cancer is a leading cause of cancer-related mortality worldwide, with its high genetic heterogeneity complicating diagnosis and treatment. Thi...

An Empirical Study of Fault Localisation Techniques for Deep Learning

With the increased popularity of Deep Neural Networks (DNNs), increases also the need for tools to assist developers in the DNN implementation, test...

BarcodeMamba: State Space Models for Biodiversity Analysis

DNA barcodes are crucial in biodiversity analysis for building automatic identification systems that recognize known species and discover unseen spe...

Grand canonical Monte Carlo and deep learning assisted enhanced sampling to characterize the distribution of Mg2+ and influence of the Drude polarizable force field on the stability of folded states of the twister ribozyme.

Molecular dynamics simulations are crucial for understanding the structural and dynamical behavior of biomolecular systems, including the impact of th...

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COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models

As key elements within the central dogma, DNA, RNA, and proteins play crucial roles in maintaining life by guaranteeing accurate genetic expression ...

TTAQ: Towards Stable Post-training Quantization in Continuous Domain Adaptation

Post-training quantization (PTQ) reduces excessive hardware cost by quantizing full-precision models into lower bit representations on a tiny calibr...

InvDiff: Invariant Guidance for Bias Mitigation in Diffusion Models

As one of the most successful generative models, diffusion models have demonstrated remarkable efficacy in synthesizing high-quality images. These m...

Dirichlet-Neumann Averaging: The DNA of Efficient Gaussian Process Simulation

Gaussian processes (GPs) and Gaussian random fields (GRFs) are essential for modelling spatially varying stochastic phenomena. Yet, the efficient ge...

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