Rheumatology

Lupus

Latest AI and machine learning research in lupus for healthcare professionals.

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A deep learning approach for rational affinity maturation of anti-VEGF nanobodies

Nanobodies offer several advantages over conventional antibodies due to their lower immunogenicity, enhanced stability, and superior tissue penetration, making them promising candidates for cancer therapy. In this study, we employ deep learning algorithms to design anti-VEGF nanobodies via affinity maturation. Our approach integrates structure-guided mutational modeling and systematic measurement ...

Screening of Oyster Peptides for Anti-Muscle Atrophy Based on Machine Learning and Computer Simulation: Guided by Antioxidant Pathways

Muscle atrophy poses a serious threat to human health, with its primary pathogenic mechanisms closely linked to oxidative stress. This study focuses on the potential of oyster peptides in alleviating dexamethasone (DEX)-induced skeletal muscle atrophy and their underlying antioxidant mechanisms. Utilizing efficient integrated machine learning and computer simulation methods, a systematic screening...

Multivariate analysis of glycogenes reveals coordinated regulation of immunoglobulin glycosylation in an immortalized human B cell system

While neutralizing ability has traditionally been considered the most important antibody function, appreciation has grown for Fc-mediated ‘extra-neutr...

Cellohood: multi-granular discovery of cellular neighborhoods with a permutation-invariant set transformer auto-encoder

Discovering cellular neighborhoods and their roles in disease requires computational methods that consider the full breadth of data and offer multi-le...

Hierarchical Machine Learning Uncovers Topological Signatures of Autophagy Regulation by Oral Bacteria in Oral Squamous Cell Carcinoma

Oral squamous cell carcinoma (OSCC) progression has been increasingly linked to dysbiosis of the oral microbiome. We hypothesized that pathogenic vers...

GenVS-TBDB: A Target-Aware AI-Generated and Virtual-Screened Small-Molecule Library for Tuberculosis Drug Discovery

Tuberculosis (TB) remains a leading global health threat, with over 10 million new cases and 1.25 million deaths reported in 2023. Current TB therapie...

Ensemble-DeepSets: an interpretable deep learning framework for single-cell resolution profiling of immunological aging

Immunological aging (immunosenescence) drives increased susceptibility to infections and reduced vaccine efficacy in elderly populations. Current bulk...

Deep learning inference of universal dormancy pseudotime reveals the cellular targets of anti-cancer therapies

Controlled exit from and re-entry into the cell cycle is essential for multi-cellular life, while aberrant quiescent and senescent cell states have be...

Retinal vascularization rate predicts retinopathy of prematurity and remains unaffected by low-dose bevacizumab treatment

To assess the rate of retinal vascularisation derived from ultra-widefield (UWF) imaging-based retinopathy of prematurity (ROP) screening as predictor...

A micro-ChromaDot array with AI integration for the detection of multiple biomarkers in a small portable device

With the rapid growth of digital healthcare, diagnosis, prognosis, and monitoring of chronic and acute diseases at home are increasingly in demand. In...

Development of an artificial intelligence-generated, explainable treatment recommendation system for urothelial carcinoma and renal cell carcinoma to support multidisciplinary cancer conferences

Decisions on the best available treatment in clinical oncology are based on expert opinions in multidisciplinary cancer conferences (MCC). Artificial ...

Machine Learning for Predicting Thrombotic Recurrence in Antiphospholipid Syndrome

Thrombotic Antiphospholipid Syndrome (TAPS) is an autoimmune disorder associated with a high risk of recurrent thromboembolic events. Despite advances...

Proteome-wide autoantibody screening and holistic autoantigenomic analysis unveil COVID-19 signature of autoantibody landscape

This study presents “aUToAntiBody Comprehensive Database (UT-ABCD)”, a comprehensive catalog of autoantibody profiles in 284 human individuals. The su...

Early Prediction of Anti-PD-1 Therapy Response in Hepatocellular Carcinoma Using Gut Microbiota Biomarkers

Hepatocellular carcinoma (HCC) remains a leading cause of cancer-related mortality, and response rates to anti-PD-1 therapy are suboptimal. Previous m...

AI-detected tumor-infiltrating lymphocytes for predicting outcomes in anti-PD1 based treated melanoma

Easy and accessible biomarkers to predict response to immune checkpoint inhibition (ICI)-treated melanoma are limited. To evaluate artificial intellig...

The Golgi Apparatus as an Arbiter of Oncofetal Reprogramming: A Systematic Review and Meta-Analysis Linking Embryonic Germ Layer Origin to the Post-Translational Modification Landscape of Cancer

Post-translational modifications (PTMs) represent a fourth dimension of the genetic code, orchestrated by the Golgi apparatus and central to the biolo...

Evaluating anti-LGBTQIA+ medical bias in large language models

Large Language Models (LLMs) are increasingly deployed in clinical settings for tasks ranging from patient communication to decision support. While th...

Adapting Biomedical Foundation Models for Predicting Outcomes of Anti Seizure Medications

Epilepsy affects over 50 million people worldwide, with anti-seizure medications (ASMs) as the primary treatment for seizure control. However, ASM sel...

Serum metabolic signatures are associated with anti-drug antibody development in rheumatoid arthritis patients treated with adalimumab

Development of anti-drug antibodies (ADAs) is a barrier to long-term efficacy of biologic therapies in rheumatoid arthritis (RA), but no biomarkers ex...

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