Transplantation

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Effects of Structural Reward Shaping on Biophysical Properties in RL-Trained Plasmid Generators

We compare the efficacy and distributional effects of supervised fine-tuning (SFT) and reinforcement learning (RL) post-training for PlasmidGPT, a foundation model for whole-plasmid generation, using Group Relative Policy Optimization (GRPO) for the RL model. Using a biologically motivated reward function encoding functional annotations, length constraints, and repeat penalties, the RL model achie...

Peripheral anatomy of the dolphin ear and associated nervous structures: insights from macroscopic dissection, DICE-{micro}CT, histology, and confocal microscopy

The peripheral auditory system of dolphins comprises specialised bony, fatty, vascular, and neural structures adapted for underwater hearing and diving physiology. These include the external ear canal, acoustic fat bodies, sinuses, and associated neurovascular networks, which together support sound conduction, protection, and possibly sensory functions. Despite advances in gross anatomical descrip...

CasualSynth: Generating Structurally Sound Synthetic Data

Large Language Models (LLMs) generate realistic synthetic data but offer no guarantee that their outputs respect the causal mechanisms governing the t...

May 17 2026 2605.17528v1
PXN Unlocks the Power of Public Gene Expression Data Through Cross-Technology Integration

The immense value of public gene expression repositories is constrained by the lack of compatibility among datasets generated from diverse experimenta...

Architecture-Aware Explanation Auditing for Industrial Visual Inspection

Industrial visual inspection systems increasingly rely on deep classifiers whose heatmap explanations may appear visually plausible while failing to i...

May 14 2026 2605.14255v1
ATLAS: Agentic or Latent Visual Reasoning? One Word is Enough for Both

Visual reasoning, often interleaved with intermediate visual states, has emerged as a promising direction in the field. A straightforward approach is ...

May 14 2026 2605.15198v1
SIGNAL: A Scalable, Real-World Model for Rapid Intraoperative Molecular Classification of Gliomas Using Stimulated Raman Histology

Background: Previous machine learning models to intraoperatively predict the molecular status of gliomas using stimulated Raman histology (SRH), such ...

Transferable spatial omics deconvolution with SpaRank

By resolving cell-type compositions from multi-cellular spatial measurements, deconvolution is central to resolving the cellular landscape of complex ...

MRI reveals the hierarchical organization of abdominal biological aging from shared burden to disease-specific organ engagement

Multi-organ biological aging is often represented as parallel organ-specific clocks, but how age gaps should be interpreted within an anatomically cou...

Systematic toxicological study of PFOS/PFOA co-exposure driving prostate cancer: Core target identification, TME immune remodeling, and combination drug prediction

Background: Per- and polyfluoroalkyl substances (PFAS), particularly perfluorooctane sulfonate (PFOS) and perfluorooctanoic acid (PFOA), are persisten...

3DBrainOne: an integrated end-to-end platform for 3D histological analysis of whole mouse brains

Three-dimensional (3D) whole-organ imaging and analysis at cellular resolution (termed 3D histology) provide profound insights into the organization a...

Portable Active Learning for Object Detection

Annotating bounding boxes is costly and limits the scalability of object detection. This challenge is compounded by the need to preserve high accuracy...

May 11 2026 2605.10349v1
AI-enabled virtual immunopeptidomics links quantitative neoantigen presentation to immunogenicity

Effective anti-tumor T cell response depends on both neoantigen quality (non-selfness) and quantity (abundance). However, existing methods for neoanti...

Pan-FM: A Pan-Organ Foundation Model with Saliency-Guided Masking for Missing Robustness

Foundation models (FMs) have shown great promise in medical imaging, but most FMs are trained on unimodal data within isolated domains, such as brain ...

May 8 2026 2605.07055v1
BRIDGE: A Multi-organ Histo-ST Foundation Model Enables Virtual Spatial Transcriptomics for Enhanced Few-shot Cancer Diagnosis

Recent studies have explored generating virtual spatial transcriptomics (ST) profiles from histological images, offering a promising alternative to la...

Causal-Aware Foundation-Model for Bilevel Optimization in Discrete Choice Settings

We introduce a causal aware foundation-model framework for real time optimal decision making in discrete choice environments. We propose a constrained...

May 7 2026 2605.06941v1
Self Driving Datasets: From 20 Million Papers to Nuanced Biomedical Knowledge at Scale

Manually curated biomedical repositories -- spanning bioactivity, genomics, and chemistry -- are expensive to maintain, lag behind primary literature,...

May 7 2026 2605.07022v1
iTRIALSPACE: Programmable Virtual Lesion Trials for Controlled Evaluation of Lung CT Models

We introduce iTRIALSPACE, a programmable evaluation framework for controlled assessment of lung CT models. Standard benchmarks are static retrospectiv...

May 7 2026 2605.05761v1
Beyond Forgetting in Continual Medical Image Segmentation: A Comprehensive Benchmark Study

Continual learning (CL) is essential for deploying medical image segmentation models in clinical environments where imaging domains, anatomical target...

May 7 2026 2605.06160v1
Multimorbidity increases susceptibility to myocardial injury following cardiac surgery via dysregulated macrophage activation and the development of a cardiomyopathy phenotype

Background: People with Multiple Long-Term Conditions (MLTC) experience higher rates of organ failure and death following cardiac surgery. The aim of ...

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