Transplantation

Latest AI and machine learning research in transplantation for healthcare professionals.

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Highly Accurate Estimation of the Fold Accuracy of Protein Structural Models

The function of a protein is intrinsically linked to its three-dimensional fold, and deep learning has revolutionized the field by enabling high-accuracy structure prediction at an unprecedented scale. Nevertheless, the growing deployment of these predictive pipelines in drug discovery and structural biology reveals a critical bottleneck that lies in the lack of independent and rigorous model accu...

Testing and Estimating Causal Treatment Effect Heterogeneity in Observational Studies via Revised Deep Semiparametric Regression: A Lung Transplant Case Study

Lung transplantation programs must decide when bilateral lung transplantation (BLT) offers meaningful functional benefit over single lung transplantation (SLT). Because donor and recipient characteristics jointly shape outcomes, the BLT-SLT contrast may differ across patients. However, observational registries pose a key statistical challenge: apparent subgroup differences can be artifacts of comp...

A Hybrid Physics-Deep Learning Framework for Combinatorial De Novo Design of Small-Molecule Binding Proteins

Engineering small-molecule binding proteins de novo remains a significant challenge as even advanced generative models struggle to model the atom-leve...

A Multimodal Clinically Informed Coarse-to-Fine Framework for Longitudinal CT Registration in Proton Therapy

Proton therapy offers superior organ-at-risk sparing but is highly sensitive to anatomical changes, making accurate deformable image registration (DIR...

Apr 15 2026 2604.13397v1
AbdomenGen: Sequential Volume-Conditioned Diffusion Framework for Abdominal Anatomy Generation

Computational phantoms are widely used in medical imaging research, yet current systems to generate controlled, clinically meaningful anatomical varia...

Apr 14 2026 2604.12969v1
Efficient KernelSHAP Explanations for Patch-based 3D Medical Image Segmentation

Perturbation-based explainability methods such as KernelSHAP provide model-agnostic attributions but are typically impractical for patch-based 3D medi...

Apr 13 2026 2604.11775v1
A structure-informed deep learning framework for modeling TCR-peptide-HLA interactions

The interaction between T cell receptors (TCRs), peptides, and human leukocyte antigens (HLAs) underlies antigen-specific T cell immunity. Despite sub...

Biologically-Grounded Multi-Encoder Architectures as Developability Oracles for Antibody Design

Generative models can now propose thousands of \emph{de novo} antibody sequences, yet translating these designs into viable therapeutics remains const...

Apr 10 2026 2604.09369v1
Spatial Organellomics Maps Cell State Diversity and Metabolic Adaptation in Tissues

Cell state diversity drives tissue adaptability, repair, and disease resilience, but fully capturing this cellular complexity remains a challenge. Mos...

GPAFormer: Graph-guided Patch Aggregation Transformer for Efficient 3D Medical Image Segmentation

Deep learning has been widely applied to 3D medical image segmentation tasks. However, due to the diversity of imaging modalities, the high-dimensiona...

Apr 8 2026 2604.06658v1
Are Face Embeddings Compatible Across Deep Neural Network Models?

Automated face recognition has made rapid strides over the past decade due to the unprecedented rise of deep neural network (DNN) models that can be t...

Apr 8 2026 2604.07282v1
Transcriptomic Models for Immunotherapy Response Prediction Show Limited Cross-cohort Generalisability

Immune checkpoint inhibitors (ICIs) have transformed cancer therapy; yet substantial proportion of patients exhibit intrinsic or acquired resistance, ...

Apr 7 2026 2604.05478v1
Quantitative assessment of collagen architecture from routine histopathological images shows concordance with Second Harmonic Generation microscopy

Collagen organisation within the tumour microenvironment plays a critical role in tumour progression and has emerged as an important structural biomar...

Real-Time Surrogate Modeling for Personalized Blood Flow Prediction and Hemodynamic Analysis

Cardiovascular modeling has rapidly advanced over the past few decades due to the rising needs for health tracking and early detection of cardiovascul...

Apr 3 2026 2604.03197v1
Combining Token Classification With Large Language Model Revision for Age-Friendly 4M Entity Recognition From Nursing Home Text Messages: Development and Evaluation Study

Background: Secure text messages (TMs) exchanged among interdisciplinary care teams in nursing homes (NHs) contain clinical information that aligns wi...

Predicting highly pathogenic avian influenza H5N1 outbreak risk using extreme weather and bird migration data in machine learning models

Background. Climate change is intensifying extreme weather events (EWEs) with potentially profound consequences for zoonotic disease dynamics, yet the...

IFN-γ Orchestrates Coordinated Immunosuppression in Head and Neck Squamous Cell Carcinoma Through JAK-STAT-IRF8 Signaling: A Transcriptome-Wide Computational Analysis

Background: Interferon-gamma (IFN-{gamma}) is the primary effector cytokine of adaptive anti-tumor immunity, yet it paradoxically induces a potent imm...

Benchmarking single cell transcriptome matching methods for incremental growth of cell atlases

Background: The advancement of single cell technologies has driven significant progress in constructing a multiscale, pan-organ Human Reference Atlas ...

ECG spectrogram-based deep learning model to predict deterioration of patients with early sepsis at the emergency department: a study from the Acutelines data- and biobank

Purpose: Early recognition of deterioration in patients with suspected infection at the emergency department (ED) is important. Current clinical scori...

S4CMDR: a metadata repository for electronic health records

Background: Electronic health records (EHRs) enable machine learning for diagnosis, prognosis, and clinical decision support. However, EHR standards v...

Mar 25 2026 2603.24118v2
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