AIMC Topic: Algorithms

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Results of the Protein Engineering Tournament: An Open Science Benchmark for Protein Modeling and Design.

Proteins
The grand challenge of protein engineering is the development of computational models to characterize and generate protein sequences for arbitrary functions. Progress is limited by lack of (1) benchmarking opportunities, (2) large protein function da...

Identifying New Candidate Predictors of Mortality in Japanese Patients with Severe Drug Eruptions.

Drug safety
UNLABELLED: BACKGROUND AND OBJECTIVES: SCORe of Toxic Epidermal Necrolysis (SCORTEN) and ABCD-10 have been developed as scoring systems for predicting mortality associated with Stevens-Johnson syndrome (SJS) or toxic epidermal necrolysis (TEN). These...

An effective statistical moment-based feature extraction technique to identify the phosphoglycerylation sites from protein sequences.

Journal of molecular graphics & modelling
A kind of covalent modification known as post-translational modification (PTM) happens following the biosynthesis process, which is important in cell biology research. A reversible PTM called Lysine phosphoglycerylation alters glycolytic enzyme activ...

MC-RED: A deep learning network for motion correction in 3D CEST imaging.

Magnetic resonance in medicine
PURPOSE: Chemical exchange saturation transfer (CEST) imaging is highly sensitive to patient motion, which can compromise the reliability of quantitative molecular analysis. This study aims to develop and validate a deep learning-based motion correct...

Personalized survival benefit estimation from living donor liver transplantation with a novel machine learning method for confounding adjustment.

Journal of hepatology
BACKGROUND & AIMS: Addressing many clinical questions, such as estimating survival differences between living donor (LDLT) and deceased donor liver transplantation (DDLT), relies on observational studies, as randomized-controlled trials (RCTs) are of...

Training a deep learning model to predict the anatomy irradiated in fluoroscopic x-ray images.

International journal of computer assisted radiology and surgery
PURPOSE: Accurate patient dosimetry estimates from fluoroscopically-guided interventions (FGIs) are hindered by limited knowledge of the specific anatomy that was irradiated. Current methods use data reported by the equipment to estimate the patient ...

Development of a deep-learning algorithm for etiological classification of subarachnoid hemorrhage using non-contrast CT scans.

European radiology
OBJECTIVES: This study aims to develop a deep learning algorithm for differentiating aneurysmal subarachnoid hemorrhage (aSAH) from non-aneurysmal subarachnoid hemorrhage (naSAH) using non-contrast computed tomography (NCCT) scans.

Automated CT segmentation for lower extremity tissues in lymphedema evaluation using deep learning.

European radiology
OBJECTIVES: Clinical assessment of lymphedema, particularly for lymphedema severity and fluid-fibrotic lesions, remains challenging with traditional methods. We aimed to develop and validate a deep learning segmentation tool for automated tissue comp...

Personalized Neural State Segmentation: Validating the Greedy State Boundary Search Algorithm for Individual-level Functional Magnetic Resonance Imaging Data.

Journal of cognitive neuroscience
Humans segment experience into a nested series of discrete events, separated by neural state transitions that can be identified in fMRI data collected during passive movie viewing. Current neural state segmentation techniques manage the noisiness of ...