AIMC Topic: Autoencoder

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Interpretable unsupervised neural network structure for data clustering via differentiable reconstruction of ONMF and sparse autoencoder.

Neural networks : the official journal of the International Neural Network Society
Neural networks, while powerful, often face significant challenges in terms of interpretability, particularly in clustering tasks. Traditional methods typically rely on post-hoc explanations or supervised learning, which limit their ability to provid...

Topology-Guided Graph Masked Autoencoder Learning for Population-Based Neurodevelopmental Disorder Diagnosis.

IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society
Exploring the pathogenic mechanisms of brain disorders within population is an important research in the field of neuroscience. Existing methods either combine clinical information to assist analysis or use data augmentation for sample expansion, ign...

ConnectomeAE: Multimodal brain connectome-based dual-branch autoencoder and its application in the diagnosis of brain diseases.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVE: Exploring the dependencies between multimodal brain networks and integrating node features to enhance brain disease diagnosis remains a significant challenge. Some work has examined only brain connectivity changes in patient...

A hybrid variational autoencoder and WGAN with gradient penalty for tertiary protein structure generation.

Scientific reports
Elucidating the tertiary structure of proteins is important for understanding their functions and interactions. While deep neural networks have advanced the prediction of a protein's native structure from its amino acid sequence, the focus on a singl...

Generating Artificial Patients With Reliable Clinical Characteristics Using a Geometry-Based Variational Autoencoder: Proof-of-Concept Feasibility Study.

Journal of medical Internet research
BACKGROUND: Artificial patient technology could transform health care by accelerating diagnosis, treatment, and mapping clinical pathways. Deep learning methods for generating artificial data in health care include data augmentation by variational au...

Developing a novel Temporal Air-quality Risk Index using LSTM autoencoder: A case study with South Korean air quality data.

The Science of the total environment
As public awareness of environmental and health issues grows, providing accurate and accessible environmental risk information is essential for informed decision-making. Environmental indices simplify the complex impacts of various environmental fact...

Automated spectral decomposition and reconstruction of optical properties using a mixed autoencoder approach.

Journal of biomedical optics
SIGNIFICANCE: Investigating optical properties (OPs) is crucial in the field of biophotonics, as it has a broad impact on understanding light-tissue interactions. However, current techniques, such as inverse Monte Carlo simulations (IMCS), have limit...

scAMZI: attention-based deep autoencoder with zero-inflated layer for clustering scRNA-seq data.

BMC genomics
BACKGROUND: Clustering scRNA-seq data plays a vital role in scRNA-seq data analysis and downstream analyses. Many computational methods have been proposed and achieved remarkable results. However, there are several limitations of these methods. First...

ECG Sensor Design Assessment with Variational Autoencoder-Based Digital Watermarking.

Sensors (Basel, Switzerland)
Designing an ECG sensor circuit requires a comprehensive approach to detect, amplify, filter, and condition the weak electrical signals produced by the heart. To evaluate sensor performance under realistic conditions, diverse ECG signals with embedde...

RPI-GGCN: Prediction of RNA-Protein Interaction Based on Interpretability Gated Graph Convolution Neural Network and Co-Regularized Variational Autoencoders.

IEEE transactions on neural networks and learning systems
RNA-protein interactions (RPIs) play an important role in several fundamental cellular physiological processes, including cell motility, chromosome replication, transcription and translation, and signaling. Predicting RPI can guide the exploration of...