AIMC Topic: Biological Ontologies
Clear Filters Showing 151 to 160 of 637 articles
Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung.
Journal of biomedical semantics
Oct 24, 2019
BACKGROUND: Although the mouse is widely used to model human lung development, function, and disease, our understanding of the molecular mechanisms involved in alveolarization of the peripheral lung is incomplete. Recently, the Molecular Atlas of Lun...
Ontology patterns for the representation of quality changes of cells in time.
Journal of biomedical semantics
Oct 16, 2019
BACKGROUND: Cell tracking experiments, based on time-lapse microscopy, have become an important tool in biomedical research. The goal is the reconstruction of cell migration patterns, shape and state changes, and, comprehensive genealogical informati...
PARS, a system combining semantic technologies with multiple criteria decision aiding for supporting antibiotic prescriptions.
Journal of biomedical informatics
Oct 14, 2019
OBJECTIVE: Motivated by the well documented worldwide spread of adverse drug events, as well as the increased danger of antibiotic resistance (caused mainly by inappropriate prescribing and overuse), we propose a novel recommendation system for antib...
Aggregating the syntactic and semantic similarity of healthcare data towards their transformation to HL7 FHIR through ontology matching.
International journal of medical informatics
Oct 5, 2019
BACKGROUND AND OBJECTIVE: Healthcare systems deal with multiple challenges in releasing information from data silos, finding it almost impossible to be implemented, maintained and upgraded, with difficulties ranging in the technical, security and hum...
Ontology-Based Healthcare Named Entity Recognition from Twitter Messages Using a Recurrent Neural Network Approach.
International journal of environmental research and public health
Sep 27, 2019
Named Entity Recognition (NER) in the healthcare domain involves identifying and categorizing disease, drugs, and symptoms for biosurveillance, extracting their related properties and activities, and identifying adverse drug events appearing in texts...
Wikidata: A large-scale collaborative ontological medical database.
Journal of biomedical informatics
Sep 23, 2019
Created in October 2012, Wikidata is a large-scale, human-readable, machine-readable, multilingual, multidisciplinary, centralized, editable, structured, and linked knowledge-base with an increasing diversity of use cases. Here, we raise awareness of...
Ontology based mining of pathogen-disease associations from literature.
Journal of biomedical semantics
Sep 18, 2019
BACKGROUND: Infectious diseases claim millions of lives especially in the developing countries each year. Identification of causative pathogens accurately and rapidly plays a key role in the success of treatment. To support infectious disease researc...
Formal Medical Knowledge Representation Supports Deep Learning Algorithms, Bioinformatics Pipelines, Genomics Data Analysis, and Big Data Processes.
Yearbook of medical informatics
Aug 16, 2019
OBJECTIVE: To select, present, and summarize the best papers published in 2018 in the field of Knowledge Representation and Management (KRM).
Enhancing Clinical Data and Clinical Research Data with Biomedical Ontologies - Insights from the Knowledge Representation Perspective.
Yearbook of medical informatics
Aug 16, 2019
OBJECTIVES: There exists a communication gap between the biomedical informatics community on one side and the computer science/artificial intelligence community on the other side regarding the meaning of the terms "semantic integration" and "knowledg...
Architecture and usability of OntoKeeper, an ontology evaluation tool.
BMC medical informatics and decision making
Aug 8, 2019
BACKGROUND: The existing community-wide bodies of biomedical ontologies are known to contain quality and content problems. Past research has revealed various errors related to their semantics and logical structure. Automated tools may help to ease th...
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