AIMC Topic: Biological Ontologies

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Modelling Events in Biomedical Decision Support Systems Using Ontologies.

Studies in health technology and informatics
Biomedical decision support systems play a crucial role in modern healthcare by assisting clinicians in making informed decisions. Events, such as physiological changes or drug reactions, are integral components of these systems, influencing patient ...

Ontologies related to livestock for the Global Burden of Animal Diseases programme: a review.

Revue scientifique et technique (International Office of Epizootics)
The Global Burden of Animal Diseases (GBADs) programme aims to assess the impact of animal health on agricultural animals, livestock production systems and associated communities worldwide. As part of the objectives of GBADs'Animal Health Ontology th...

Interpretive Description in Computerized Ontology Development: Rigour.

Studies in health technology and informatics
This poster presents the use of Interpretive Description in ontology development. The methods selected attended to the need for quality and rigour.

Towards the development of a FAIR-compliant biomedical ontology for colorectal cancer.

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
Despite the widespread development of ontologies in many domains of healthcare, the field of colorectal cancer (CRC) presents a notable gap considering the lack of standardized data models tailored to the CRC domain. To address this gap, we developed...

FastHPOCR: pragmatic, fast, and accurate concept recognition using the human phenotype ontology.

Bioinformatics (Oxford, England)
MOTIVATION: Human Phenotype Ontology (HPO)-based phenotype concept recognition (CR) underpins a faster and more effective mechanism to create patient phenotype profiles or to document novel phenotype-centred knowledge statements. While the increasing...

The Immunopeptidomics Ontology (ImPO).

Database : the journal of biological databases and curation
The adaptive immune response plays a vital role in eliminating infected and aberrant cells from the body. This process hinges on the presentation of short peptides by major histocompatibility complex Class I molecules on the cell surface. Immunopepti...

PCAO2: an ontology for integration of prostate cancer associated genotypic, phenotypic and lifestyle data.

Briefings in bioinformatics
Disease ontologies facilitate the semantic organization and representation of domain-specific knowledge. In the case of prostate cancer (PCa), large volumes of research results and clinical data have been accumulated and needed to be standardized for...

The Human Phenotype Ontology in 2024: phenotypes around the world.

Nucleic acids research
The Human Phenotype Ontology (HPO) is a widely used resource that comprehensively organizes and defines the phenotypic features of human disease, enabling computational inference and supporting genomic and phenotypic analyses through semantic similar...

Ontology-based modeling, integration, and analysis of heterogeneous clinical, pathological, and molecular kidney data for precision medicine.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Many data resources generate, process, store, or provide kidney related molecular, pathological, and clinical data. Reference ontologies offer an opportunity to support knowledge and data integration. The Kidney Precision Medicine Project (KPMP) team...

Optimizing Medication Querying Using Ontology-Driven Approach with OMOP: with an application to a large-scale COVID-19 EHR dataset.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Efficient querying for medication information in Electronic Health Record (EHR) datasets is crucial for effective patient care and clinical research. To address the complexity and data volume challenges involved in efficient medication information re...