AI Medical Compendium Topic:
Biological Ontologies

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Integrating an Ontology of Radiology Differential Diagnosis with ICD-10-CM, RadLex, and SNOMED CT.

Journal of digital imaging
An ontology offers a human-readable and machine-computable representation of the concepts in a domain and the relationships among them. Mappings between ontologies enable the reuse and interoperability of biomedical knowledge. We sought to map concep...

Cranial Nerves: Phylogeny and Ontogeny.

Anatomical record (Hoboken, N.J. : 2007)
This Special Issue, entitled "Cranial Nerves: phylogeny, ontogeny, morphology and clinical significance," has been divided into two consecutive volumes. We present here the first volume, devoted to phylogeny and ontogeny. Articles in this volume exam...

MCO: towards an ontology and unified vocabulary for a framework-based annotation of microbial growth conditions.

Bioinformatics (Oxford, England)
MOTIVATION: A major component in increasing our understanding of the biology of an organism is the mapping of its genotypic potential into its phenotypic expression profiles. This mapping is executed by the machinery of gene regulation, which is esse...

Integrating ontologies of human diseases, phenotypes, and radiological diagnosis.

Journal of the American Medical Informatics Association : JAMIA
Mappings between ontologies enable reuse and interoperability of biomedical knowledge. The Radiology Gamuts Ontology (RGO)-an ontology of 16 918 diseases, interventions, and imaging observations-provides a resource for differential diagnosis and auto...

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.

Nucleic acids research
The Human Phenotype Ontology (HPO)-a standardized vocabulary of phenotypic abnormalities associated with 7000+ diseases-is used by thousands of researchers, clinicians, informaticians and electronic health record systems around the world. Its detaile...

Human Disease Ontology 2018 update: classification, content and workflow expansion.

Nucleic acids research
The Human Disease Ontology (DO) (http://www.disease-ontology.org), database has undergone significant expansion in the past three years. The DO disease classification includes specific formal semantic rules to express meaningful disease models and ha...

The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation.

Database : the journal of biological databases and curation
Sickle cell disease (SCD) is one of the most common monogenic diseases in humans with multiple phenotypic expressions that can manifest as both acute and chronic complications. Although described more than a century ago, challenges in comprehensive d...

Current status and future perspective of computational toxicology in drug safety assessment under ontological intellection.

The Journal of toxicological sciences
For the safety assessment of pharmaceuticals, initial data management requires accurate toxicological data acquisition, which is based on regulatory safety studies according to guidelines, and computational systems have been developed under the appli...

Enabling semantic queries across federated bioinformatics databases.

Database : the journal of biological databases and curation
MOTIVATION: Data integration promises to be one of the main catalysts in enabling new insights to be drawn from the wealth of biological data available publicly. However, the heterogeneity of the different data sources, both at the syntactic and the ...

Three Problems with Big Data and Artificial Intelligence in Medicine.

Perspectives in biology and medicine
The rise of big data and artificial intelligence (AI) in health care has engendered considerable excitement, claiming to improve approaches to diagnosis, prognosis, and treatment. Amidst the enthusiasm, the philosophical assumptions that underlie the...