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Biological Ontologies

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The BMS-LM ontology for biomedical data reporting throughout the lifecycle of a research study: From data model to ontology.

Journal of biomedical informatics
Biomedical research data reuse and sharing is essential for fostering research progress. To this aim, data producers need to master data management and reporting through standard and rich metadata, as encouraged by open data initiatives such as the F...

Ontology-based identification and prioritization of candidate drugs for epilepsy from literature.

Journal of biomedical semantics
BACKGROUND: Drug repurposing can improve the return of investment as it finds new uses for existing drugs. Literature-based analyses exploit factual knowledge on drugs and diseases, e.g. from databases, and combine it with information from scholarly ...

ICEO, a biological ontology for representing and analyzing bacterial integrative and conjugative elements.

Scientific data
Bacterial integrative and conjugative elements (ICEs) are highly modular mobile genetic elements critical to the horizontal transfer of antibiotic resistance and virulence factor genes. To better understand and analyze the ongoing increase of ICEs, w...

Data-Driven Construction Safety Information Sharing System Based on Linked Data, Ontologies, and Knowledge Graph Technologies.

International journal of environmental research and public health
Accident, injury, and fatality rates remain disproportionately high in the construction industry. Information from past mishaps provides an opportunity to acquire insights, gather lessons learned, and systematically improve safety outcomes. Advances ...

HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey.

BMC bioinformatics
BACKGROUND: Ontology-based semantic similarity measures based on SNOMED-CT, MeSH, and Gene Ontology are being extensively used in many applications in biomedical text mining and genomics respectively, which has encouraged the development of semantic ...

ICD-11: an international classification of diseases for the twenty-first century.

BMC medical informatics and decision making
BACKGROUND: The International Classification of Diseases (ICD) has long been the main basis for comparability of statistics on causes of mortality and morbidity between places and over time. This paper provides an overview of the recently completed 1...

Biomedical Ontologies to Guide AI Development in Radiology.

Journal of digital imaging
The advent of deep learning has engendered renewed and rapidly growing interest in artificial intelligence (AI) in radiology to analyze images, manipulate textual reports, and plan interventions. Applications of deep learning and other AI approaches ...

An ontology network for Diabetes Mellitus in Mexico.

Journal of biomedical semantics
BACKGROUND: Medical experts in the domain of Diabetes Mellitus (DM) acquire specific knowledge from diabetic patients through monitoring and interaction. This allows them to know the disease and information about other conditions or comorbidities, tr...

Towards the Representation of Network Assets in Health Care Environments Using Ontologies.

Methods of information in medicine
OBJECTIVES: The aim of the study is to design an ontology model for the representation of assets and its features in distributed health care environments. Allow the interchange of information about these assets through the use of specific vocabularie...

Knowledge Representation and Management: Interest in New Solutions for Ontology Curation.

Yearbook of medical informatics
OBJECTIVE: To select, present and summarize some of the best papers in the field of Knowledge Representation and Management (KRM) published in 2020.