AIMC Topic: Biological Ontologies
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An automated process for supporting decisions in clustering-based data analysis.
Computer methods and programs in biomedicine
Mar 24, 2022
BACKGROUND AND OBJECTIVE: Metrics are commonly used by biomedical researchers and practitioners to measure and evaluate properties of individuals, instruments, models, methods, or datasets. Due to the lack of a standardized validation procedure for a...
The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development.
BMC bioinformatics
Mar 22, 2022
BACKGROUND: Ontologies of precisely defined, controlled vocabularies are essential to curate the results of biological experiments such that the data are machine searchable, can be computationally analyzed, and are interoperable across the biomedical...
Design and Evaluation of a Postpartum Depression Ontology.
Applied clinical informatics
Mar 9, 2022
OBJECTIVE: Postpartum depression (PPD) remains an understudied research area despite its high prevalence. The goal of this study is to develop an ontology to aid in the identification of patients with PPD and to enable future analyses with electronic...
A multipurpose TNM stage ontology for cancer registries.
Journal of biomedical semantics
Feb 22, 2022
BACKGROUND: Population-based cancer registries are a critical reference source for the surveillance and control of cancer. Cancer registries work extensively with the internationally recognised TNM classification system used to stage solid tumours, b...
Semantic Search for Large Scale Clinical Ontologies.
AMIA ... Annual Symposium proceedings. AMIA Symposium
Feb 21, 2022
Finding concepts in large clinical ontologies can be challenging when queries use different vocabularies. A search algorithm that overcomes this problem is useful in applications such as concept normalisation and ontology matching, where concepts can...
The BMS-LM ontology for biomedical data reporting throughout the lifecycle of a research study: From data model to ontology.
Journal of biomedical informatics
Feb 4, 2022
Biomedical research data reuse and sharing is essential for fostering research progress. To this aim, data producers need to master data management and reporting through standard and rich metadata, as encouraged by open data initiatives such as the F...
Ontology-based identification and prioritization of candidate drugs for epilepsy from literature.
Journal of biomedical semantics
Jan 24, 2022
BACKGROUND: Drug repurposing can improve the return of investment as it finds new uses for existing drugs. Literature-based analyses exploit factual knowledge on drugs and diseases, e.g. from databases, and combine it with information from scholarly ...
ICEO, a biological ontology for representing and analyzing bacterial integrative and conjugative elements.
Scientific data
Jan 20, 2022
Bacterial integrative and conjugative elements (ICEs) are highly modular mobile genetic elements critical to the horizontal transfer of antibiotic resistance and virulence factor genes. To better understand and analyze the ongoing increase of ICEs, w...
Data-Driven Construction Safety Information Sharing System Based on Linked Data, Ontologies, and Knowledge Graph Technologies.
International journal of environmental research and public health
Jan 11, 2022
Accident, injury, and fatality rates remain disproportionately high in the construction industry. Information from past mishaps provides an opportunity to acquire insights, gather lessons learned, and systematically improve safety outcomes. Advances ...
HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey.
BMC bioinformatics
Jan 6, 2022
BACKGROUND: Ontology-based semantic similarity measures based on SNOMED-CT, MeSH, and Gene Ontology are being extensively used in many applications in biomedical text mining and genomics respectively, which has encouraged the development of semantic ...
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