AIMC Topic: Caenorhabditis elegans

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Deep learning-based aberration compensation improves contrast and resolution in fluorescence microscopy.

Nature communications
Optical aberrations hinder fluorescence microscopy of thick samples, reducing image signal, contrast, and resolution. Here we introduce a deep learning-based strategy for aberration compensation, improving image quality without slowing image acquisit...

Machine learning-based analysis of microfluidic device immobilized C. elegans for automated developmental toxicity testing.

Scientific reports
Developmental toxicity (DevTox) tests evaluate the adverse effects of chemical exposures on an organism's development. Although current testing primarily relies on large mammalian models, the emergence of new approach methodologies (NAMs) is encourag...

An Artificial Neural Network for Image Classification Inspired by the Aversive Olfactory Learning Neural Circuit in Caenorhabditis elegans.

Advanced science (Weinheim, Baden-Wurttemberg, Germany)
This study introduces an artificial neural network (ANN) for image classification task, inspired by the aversive olfactory learning neural circuit in Caenorhabditis elegans (C. elegans). Although artificial neural networks (ANNs) have demonstrated re...

Machine Learning-Assisted High-Throughput Screening for Anti-MRSA Compounds.

IEEE/ACM transactions on computational biology and bioinformatics
BACKGROUND: Antimicrobial resistance is a major public health threat, and new agents are needed. Computational approaches have been proposed to reduce the cost and time needed for compound screening.

Discovering geroprotectors through the explainable artificial intelligence-based platform AgeXtend.

Nature aging
Aging involves metabolic changes that lead to reduced cellular fitness, yet the role of many metabolites in aging is unclear. Understanding the mechanisms of known geroprotective molecules reveals insights into metabolic networks regulating aging and...

Memristive Circuit Implementation of Caenorhabditis Elegans Mechanism for Neuromorphic Computing.

IEEE transactions on neural networks and learning systems
To overcome the energy efficiency bottleneck of the von Neumann architecture and scaling limit of silicon transistors, an emerging but promising solution is neuromorphic computing, a new computing paradigm inspired by how biological neural networks h...

A machine learning enhanced EMS mutagenesis probability map for efficient identification of causal mutations in Caenorhabditis elegans.

PLoS genetics
Chemical mutagenesis-driven forward genetic screens are pivotal in unveiling gene functions, yet identifying causal mutations behind phenotypes remains laborious, hindering their high-throughput application. Here, we reveal a non-uniform mutation rat...

MGNDTI: A Drug-Target Interaction Prediction Framework Based on Multimodal Representation Learning and the Gating Mechanism.

Journal of chemical information and modeling
Drug-Target Interaction (DTI) prediction facilitates acceleration of drug discovery and promotes drug repositioning. Most existing deep learning-based DTI prediction methods can better extract discriminative features for drugs and proteins, but they ...

Inference of Essential Genes of the Parasite via Machine Learning.

International journal of molecular sciences
Over the years, comprehensive explorations of the model organisms (elegant worm) and (vinegar fly) have contributed substantially to our understanding of complex biological processes and pathways in multicellular organisms generally. Extensive func...

Prediction of Protein-Protein Interactions Based on Integrating Deep Learning and Feature Fusion.

International journal of molecular sciences
Understanding protein-protein interactions (PPIs) helps to identify protein functions and develop other important applications such as drug preparation and protein-disease relationship identification. Deep-learning-based approaches are being intensel...