AIMC Topic: Cell Nucleus

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AER-Net: Attention-Enhanced Residual Refinement Network for Nuclei Segmentation and Classification in Histology Images.

Sensors (Basel, Switzerland)
The acurate segmentation and classification of nuclei in histological images are crucial for the diagnosis and treatment of colorectal cancer. However, the aggregation of nuclei and intra-class variability in histology images present significant chal...

A survey on cell nuclei instance segmentation and classification: Leveraging context and attention.

Medical image analysis
Nuclear-derived morphological features and biomarkers provide relevant insights regarding the tumour microenvironment, while also allowing diagnosis and prognosis in specific cancer types. However, manually annotating nuclei from the gigapixel Haemat...

Multifunctional aggregation network of cell nuclei segmentation aiming histopathological diagnosis assistance: A new MA-Net construction.

PloS one
Automated diagnostic systems can enhance the accuracy and efficiency of pathological diagnoses, nuclear segmentation plays a crucial role in computer-aided diagnosis systems for histopathology. However, achieving accurate nuclear segmentation is chal...

Structure Embedded Nucleus Classification for Histopathology Images.

IEEE transactions on medical imaging
Nuclei classification provides valuable information for histopathology image analysis. However, the large variations in the appearance of different nuclei types cause difficulties in identifying nuclei. Most neural network based methods are affected ...

UNSEG: unsupervised segmentation of cells and their nuclei in complex tissue samples.

Communications biology
Multiplexed imaging technologies have made it possible to interrogate complex tissue microenvironments at sub-cellular resolution within their native spatial context. However, proper quantification of this complexity requires the ability to easily an...

Convolutional neural network-based regression analysis to predict subnuclear chromatin organization from two-dimensional optical scattering signals.

Journal of biomedical optics
SIGNIFICANCE: Azimuth-resolved optical scattering signals obtained from cell nuclei are sensitive to changes in their internal refractive index profile. These two-dimensional signals can therefore offer significant insights into chromatin organizatio...

Utilizing convolutional neural networks for discriminating cancer and stromal cells in three-dimensional cell culture images with nuclei counterstain.

Journal of biomedical optics
SIGNIFICANCE: Accurate cell segmentation and classification in three-dimensional (3D) images are vital for studying live cell behavior and drug responses in 3D tissue culture. Evaluating diverse cell populations in 3D cell culture over time necessita...

aiSEGcell: User-friendly deep learning-based segmentation of nuclei in transmitted light images.

PLoS computational biology
Segmentation is required to quantify cellular structures in microscopic images. This typically requires their fluorescent labeling. Convolutional neural networks (CNNs) can detect these structures also in only transmitted light images. This eliminate...

An Automated Framework for Histopathological Nucleus Segmentation With Deep Attention Integrated Networks.

IEEE/ACM transactions on computational biology and bioinformatics
Clinical management and accurate disease diagnosis are evolving from qualitative stage to the quantitative stage, particularly at the cellular level. However, the manual process of histopathological analysis is lab-intensive and time-consuming. Meanw...

A deep learning-based toolkit for 3D nuclei segmentation and quantitative analysis in cellular and tissue context.

Development (Cambridge, England)
We present a new set of computational tools that enable accurate and widely applicable 3D segmentation of nuclei in various 3D digital organs. We have developed an approach for ground truth generation and iterative training of 3D nuclear segmentation...