AIMC Topic: Computational Biology

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ES-MDA: Enhanced Similarity-based MiRNA-Disease Association.

Current protein & peptide science
Accumulating evidence demonstrate that miRNAs can be treated as critical biomarkers in various complex human diseases. Thus, the identifications on potential miRNA-disease associations have become a hotpot for providing better understanding of diseas...

A Coordinated Approach by Public Domain Bioinformatics Resources to Aid the Fight Against Alzheimer's Disease Through Expert Curation of Key Protein Targets.

Journal of Alzheimer's disease : JAD
BACKGROUND: The analysis and interpretation of data generated from patient-derived clinical samples relies on access to high-quality bioinformatics resources. These are maintained and updated by expert curators extracting knowledge from unstructured ...

Current Advances and Limitations of Deep Learning in Anticancer Drug Sensitivity Prediction.

Current topics in medicinal chemistry
Anticancer drug screening can accelerate drug discovery to save the lives of cancer patients, but cancer heterogeneity makes this screening challenging. The prediction of anticancer drug sensitivity is useful for anticancer drug development and the i...

mAML: an automated machine learning pipeline with a microbiome repository for human disease classification.

Database : the journal of biological databases and curation
Due to the concerted efforts to utilize the microbial features to improve disease prediction capabilities, automated machine learning (AutoML) systems aiming to get rid of the tediousness in manually performing ML tasks are in great demand. Here we d...

Gene Ontology Curation of Neuroinflammation Biology Improves the Interpretation of Alzheimer's Disease Gene Expression Data.

Journal of Alzheimer's disease : JAD
BACKGROUND: Gene Ontology (GO) is a major bioinformatic resource used for analysis of large biomedical datasets, for example from genome-wide association studies, applied universally across biological fields, including Alzheimer's disease (AD) resear...

Identification of 2'-O-methylation Site by Investigating Multi-feature Extracting Techniques.

Combinatorial chemistry & high throughput screening
BACKGROUND: RNA methylation is a reversible post-transcriptional modification involving numerous biological processes. Ribose 2'-O-methylation is part of RNA methylation. It has shown that ribose 2'-O-methylation plays an important role in immune rec...

Structured reviews for data and knowledge-driven research.

Database : the journal of biological databases and curation
UNLABELLED: Hypothesis generation is a critical step in research and a cornerstone in the rare disease field. Research is most efficient when those hypotheses are based on the entirety of knowledge known to date. Systematic review articles are common...

Methods of Computational Interactomics for Investigating Interactions of Human Proteoforms.

Biochemistry. Biokhimiia
Human genome contains ca. 20,000 protein-coding genes that could be translated into millions of unique protein species (proteoforms). Proteoforms coded by a single gene often have different functions, which implies different protein partners. By inte...