AIMC Topic: Convolutional Neural Networks

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CasPro-ESM2: Accurate identification of Cas proteins integrating pre-trained protein language model and multi-scale convolutional neural network.

International journal of biological macromolecules
Cas proteins (CRISPR-associated protein) are the core components of the CRISPR-Cas system, playing critical roles in defending against foreign DNA and RNA invasions. Identifying Cas proteins can provide deeper insights into the immune mechanisms of t...

Capsule DenseNet++: Enhanced autism detection framework with deep learning and reinforcement learning-based lifestyle recommendation.

Computers in biology and medicine
Autism Spectrum Disorder (ASD) is a complex neurological condition that impairs the ability to interact, communicate, and behave. It is becoming increasingly prevalent worldwide, with an increase in the number of young children diagnosed with ASD in ...

PET and CT based DenseNet outperforms advanced deep learning models for outcome prediction of oropharyngeal cancer.

Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology
BACKGROUND: In the HECKTOR 2022 challenge set [1], several state-of-the-art (SOTA, achieving best performance) deep learning models were introduced for predicting recurrence-free period (RFP) in head and neck cancer patients using PET and CT images.

Artificial Intelligence and Convolutional Neural Networks-Driven Detection of Micro and Macro Metastasis of Cutaneous Melanoma to the Lymph Nodes.

The American Journal of dermatopathology
BACKGROUND: Lymph node (LN) assessment is a critical component in the staging and management of cutaneous melanoma. Traditional histopathological evaluation, supported by immunohistochemical staining, is the gold standard for detecting LN metastases....

A semi-supervised convolutional neural network for diagnosis of pancreatic ductal adenocarcinoma based on EUS-FNA cytological images.

BMC cancer
BACKGROUND: The cytological diagnostic process of EUS-FNA smears is time-consuming and manpower-intensive, and the conclusion could be subjective and controversial. Moreover, the relative lack of cytopathologists has limited the widespread implementa...

CacPred: a cascaded convolutional neural network for TF-DNA binding prediction.

BMC genomics
BACKGROUND: Transcription factors (TFs) regulate the genes' expression by binding to DNA sequences. Aligned TFBSs of the same TF are seen as cis-regulatory motifs, and substantial computational efforts have been invested to find motifs. In recent yea...

Robust resolution improvement of 3D UTE-MR angiogram of normal vasculatures using super-resolution convolutional neural network.

Scientific reports
Contrast-enhanced UTE-MRA provides detailed angiographic information but at the cost of prolonged scanning periods, which may impose moving artifacts and affect the promptness of diagnosis and treatment of time-sensitive diseases like stroke. This st...

Revolutionizing biological digital twins: Integrating internet of bio-nano things, convolutional neural networks, and federated learning.

Computers in biology and medicine
Digital twins (DTs) are advancing biotechnology by providing digital models for drug discovery, digital health applications, and biological assets, including microorganisms. However, the hypothesis posits that implementing micro- and nanoscale DTs, e...

A Novel Fusion Framework Combining Graph Embedding Class-Based Convolutional Recurrent Attention Network with Brown Bear Optimization Algorithm for EEG-Based Parkinson's Disease Recognition.

Journal of molecular neuroscience : MN
Parkinson's disease recognition (PDR) involves identifying Parkinson's disease using clinical evaluations, imaging studies, and biomarkers, focusing on early symptoms like tremors, rigidity, and bradykinesia to facilitate timely treatment. However, d...