AIMC Topic: Data Curation
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The reactome pathway knowledgebase 2022.
Nucleic acids research
Jan 7, 2022
The Reactome Knowledgebase (https://reactome.org), an Elixir core resource, provides manually curated molecular details across a broad range of physiological and pathological biological processes in humans, including both hereditary and acquired dise...
Developing a standardized protocol for computational sentiment analysis research using health-related social media data.
Journal of the American Medical Informatics Association : JAMIA
Jun 12, 2021
OBJECTIVE: Sentiment analysis is a popular tool for analyzing health-related social media content. However, existing studies exhibit numerous methodological issues and inconsistencies with respect to research design and results reporting, which could...
UniProt: the universal protein knowledgebase in 2021.
Nucleic acids research
Jan 8, 2021
The aim of the UniProt Knowledgebase is to provide users with a comprehensive, high-quality and freely accessible set of protein sequences annotated with functional information. In this article, we describe significant updates that we have made over ...
Mouse Genome Database (MGD): Knowledgebase for mouse-human comparative biology.
Nucleic acids research
Jan 8, 2021
The Mouse Genome Database (MGD; http://www.informatics.jax.org) is the community model organism knowledgebase for the laboratory mouse, a widely used animal model for comparative studies of the genetic and genomic basis for human health and disease. ...
Computational framework for fusing eye movements and spoken narratives for image annotation.
Journal of vision
Jul 1, 2020
Despite many recent advances in the field of computer vision, there remains a disconnect between how computers process images and how humans understand them. To begin to bridge this gap, we propose a framework that integrates human-elicited gaze and ...
Structured reviews for data and knowledge-driven research.
Database : the journal of biological databases and curation
Jan 1, 2020
UNLABELLED: Hypothesis generation is a critical step in research and a cornerstone in the rare disease field. Research is most efficient when those hypotheses are based on the entirety of knowledge known to date. Systematic review articles are common...
Artificial intelligence with multi-functional machine learning platform development for better healthcare and precision medicine.
Database : the journal of biological databases and curation
Jan 1, 2020
Precision medicine is one of the recent and powerful developments in medical care, which has the potential to improve the traditional symptom-driven practice of medicine, allowing earlier interventions using advanced diagnostics and tailoring better ...
Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase.
Database : the journal of biological databases and curation
Jan 1, 2020
Biological knowledgebases rely on expert biocuration of the research literature to maintain up-to-date collections of data organized in machine-readable form. To enter information into knowledgebases, curators need to follow three steps: (i) identify...
Doc2Hpo: a web application for efficient and accurate HPO concept curation.
Nucleic acids research
Jul 2, 2019
We present Doc2Hpo, an interactive web application that enables interactive and efficient phenotype concept curation from clinical text with automated concept normalization using the Human Phenotype Ontology (HPO). Users can edit the HPO concepts aut...
UniProt: a worldwide hub of protein knowledge.
Nucleic acids research
Jan 8, 2019
The UniProt Knowledgebase is a collection of sequences and annotations for over 120 million proteins across all branches of life. Detailed annotations extracted from the literature by expert curators have been collected for over half a million of the...
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