AIMC Topic: Data Management

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A systematic review on natural language processing systems for eligibility prescreening in clinical research.

Journal of the American Medical Informatics Association : JAMIA Dec 28, 2021
OBJECTIVE: We conducted a systematic review to assess the effect of natural language processing (NLP) systems in improving the accuracy and efficiency of eligibility prescreening during the clinical research recruitment process.
Humans Natural Language Processing Checklist Eligibility Determination Research Design Data Management
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Extracting social determinants of health from electronic health records using natural language processing: a systematic review.

Journal of the American Medical Informatics Association : JAMIA Nov 25, 2021
OBJECTIVE: Social determinants of health (SDoH) are nonclinical dispositions that impact patient health risks and clinical outcomes. Leveraging SDoH in clinical decision-making can potentially improve diagnosis, treatment planning, and patient outcom...
Natural Language Processing Social Determinants of Health Electronic Health Records Data Management Humans Machine Learning
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Understanding the Gap Between Information Models and Realism-Based Ontologies Using the Generic Component Model.

Studies in health technology and informatics Oct 27, 2021
The wide-spread use of Common Data Models and information models in biomedical informatics encourages assumptions that those models could provide the entirety of what is needed for knowledge representation purposes. Based on the lack of computable se...
Data Management Semantics Biological Ontologies
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Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.

Briefings in bioinformatics Sep 2, 2021
This article describes some use case studies and self-assessments of FAIR status of de.NBI services to illustrate the challenges and requirements for the definition of the needs of adhering to the FAIR (findable, accessible, interoperable and reusabl...
Neural Networks, Computer Software Phenotype Humans Proteome Workflow Plants Data Management Proteomics Genome, Human High-Throughput Nucleotide Sequencing International Cooperation Metadata Self-Assessment
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Artificial intelligence projects in healthcare: 10 practical tips for success in a clinical environment.

BMJ health & care informatics Jul 1, 2021
There is much discussion concerning 'digital transformation' in healthcare and the potential of artificial intelligence (AI) in healthcare systems. Yet it remains rare to find AI solutions deployed in routine healthcare settings. This is in part due ...
Data Management Artificial Intelligence Delivery of Health Care Humans
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Predicting candidate genes from phenotypes, functions and anatomical site of expression.

Bioinformatics (Oxford, England) May 5, 2021
MOTIVATION: Over the past years, many computational methods have been developed to incorporate information about phenotypes for disease-gene prioritization task. These methods generally compute the similarity between a patient's phenotypes and a data...
Data Management Biological Ontologies Machine Learning Animals Software Mice Phenotype
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Teledermatology in 2020: past, present and future perspectives.

Italian journal of dermatology and venereology Apr 1, 2021
Born in 1995, teledermatology (TD) turns 25 years old today. Since then, TD evolved according to patients and physicians needs. The present review aimed to summarize all the efforts and experiences carried out in the field of TD and its subspecialtie...
Artificial Intelligence Aged Data Management Adult Humans Privacy
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UMLS-based data augmentation for natural language processing of clinical research literature.

Journal of the American Medical Informatics Association : JAMIA Mar 18, 2021
OBJECTIVE: The study sought to develop and evaluate a knowledge-based data augmentation method to improve the performance of deep learning models for biomedical natural language processing by overcoming training data scarcity.
Information Storage and Retrieval Unified Medical Language System Data Management Natural Language Processing Biomedical Research
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Application of Bayesian networks to generate synthetic health data.

Journal of the American Medical Informatics Association : JAMIA Mar 18, 2021
OBJECTIVE: This study seeks to develop a fully automated method of generating synthetic data from a real dataset that could be employed by medical organizations to distribute health data to researchers, reducing the need for access to real data. We h...
Neural Networks, Computer Disclosure Data Management Bayes Theorem Machine Learning Humans Information Dissemination Confidentiality Data Anonymization Datasets as Topic
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Prediction of age and sex from paranasal sinus images using a deep learning network.

Medicine Feb 19, 2021
This study was conducted to develop a convolutional neural network (CNN)-based model to predict the sex and age of patients by identifying unique unknown features from paranasal sinus (PNS) X-ray images.We employed a retrospective study design and us...
Deep Learning Retrospective Studies Paranasal Sinuses Data Management Female Humans Algorithms Male Maxillary Sinus Predictive Value of Tests Neural Networks, Computer Adult Databases, Factual Middle Aged Area Under Curve Sensitivity and Specificity Aged Radiography
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