AIMC Topic: Data Mining

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Cross-registry neural domain adaptation to extract mutational test results from pathology reports.

Journal of biomedical informatics
OBJECTIVE: We study the performance of machine learning (ML) methods, including neural networks (NNs), to extract mutational test results from pathology reports collected by cancer registries. Given the lack of hand-labeled datasets for mutational te...

Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences.

Communications biology
The characterization of antimicrobial resistance genes from high-throughput sequencing data has become foundational in public health research and regulation. This requires mapping sequence reads to databases of known antimicrobial resistance genes to...

Adaptive robust principal component analysis.

Neural networks : the official journal of the International Neural Network Society
Robust Principal Component Analysis (RPCA) is a powerful tool in machine learning and data mining problems. However, in many real-world applications, RPCA is unable to well encode the intrinsic geometric structure of data, thereby failing to obtain t...

Machine learning and data mining frameworks for predicting drug response in cancer: An overview and a novel in silico screening process based on association rule mining.

Pharmacology & therapeutics
A major challenge in cancer treatment is predicting the clinical response to anti-cancer drugs on a personalized basis. The success of such a task largely depends on the ability to develop computational resources that integrate big "omic" data into e...

Using distant supervision to augment manually annotated data for relation extraction.

PloS one
Significant progress has been made in applying deep learning on natural language processing tasks recently. However, deep learning models typically require a large amount of annotated training data while often only small labeled datasets are availabl...

Data-driven modeling and prediction of blood glucose dynamics: Machine learning applications in type 1 diabetes.

Artificial intelligence in medicine
BACKGROUND: Diabetes mellitus (DM) is a metabolic disorder that causes abnormal blood glucose (BG) regulation that might result in short and long-term health complications and even death if not properly managed. Currently, there is no cure for diabet...

A new machine learning technique for an accurate diagnosis of coronary artery disease.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVE: Coronary artery disease (CAD) is one of the commonest diseases around the world. An early and accurate diagnosis of CAD allows a timely administration of appropriate treatment and helps to reduce the mortality. Herein, we de...

A comparison of three data mining time series models in prediction of monthly brucellosis surveillance data.

Zoonoses and public health
The early and accurately detection of brucellosis incidence change is of great importance for implementing brucellosis prevention strategic health planning. The present study investigated and compared the performance of the three data mining techniqu...

Dual CNN for Relation Extraction with Knowledge-Based Attention and Word Embeddings.

Computational intelligence and neuroscience
Relation extraction is the underlying critical task of textual understanding. However, the existing methods currently have defects in instance selection and lack background knowledge for entity recognition. In this paper, we propose a knowledge-based...

Investigating the transferring capability of capsule networks for text classification.

Neural networks : the official journal of the International Neural Network Society
Text classification has been attracting increasing attention with the growth of textual data created on the Internet. Great progress has been made by deep neural networks for domains where a large amount of labeled training data is available. However...