AIMC Topic: Drug Discovery

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Trained Immunity: RoadMap for drug discovery and development.

eLife
Trained Immunity is the nonspecific (pathogen agnostic) memory of innate immune cells, characterized by altered responses upon secondary stimulation. This review provides a RoadMap for the discovery and development of therapeutics targeting Trained I...

kinCSM-RTK: Machine Learning-Based Screening of Receptor Tyrosine Kinase Inhibitors in Drug Discovery.

Journal of chemical information and modeling
Receptor tyrosine kinases (RTKs) are key regulators of cellular functions, such as differentiation, migration and proliferation. Dysregulated RTK activity contributes to various diseases, including neurological disorders and cancer, for which small m...

Improved ADME Prediction by Multitask Pretraining on Predicted Data: Insights from the ASAP-Polaris-OpenADMET Blind Challenge.

Journal of chemical information and modeling
Absorption, distribution, metabolism, and excretion (ADME) properties are among the key factors in determining the success of lead discovery and optimization campaigns. Fast and accurate prediction of molecular ADME profiles is hence of particular in...

AI-assisted identification of innovative phytochemicals from Aizoon canariense aimed at brachyury protein in chordoma: a computational strategy.

Scientific reports
Chordoma is an unique and aggressive bone malignancy along with limited therapeutic options, largely due to the undruggable nature of the TBXT oncoprotein. In this study, we employed an AI-assisted drug discovery approach to optimize β-sitosterol fro...

In silico-driven protocol for hit-to-lead optimization: a case study on PDE9A inhibitors.

Journal of computer-aided molecular design
Hit-to-lead (H2L) optimization is a critical stage in small-molecule drug discovery, where efficient exploration of chemical space is required to identify promising lead compounds. Conventional H2L workflows rely on iterative synthesis and experiment...

LGABAN: An Integrated Multi-Scale Approach Combining Graph and Sequence Features for Enhanced Prediction of Drug-Protein Interactions.

Journal of chemical information and modeling
The accurate identification of drug-target interactions is crucial for shortening the timeline and lowering the expenses of pharmaceutical research, as the discovery of novel drugs remains a highly complex, resource-intensive, and lengthy endeavor. D...

MambaTransDTA: A Hybrid Mamba-Transformer Architecture for Accurate Drug-Target Binding Affinity Prediction.

Journal of chemical information and modeling
In recent years, deep learning techniques have made significant advances in drug-target affinity (DTA) prediction. However, existing models still have considerable room for improvement in prediction accuracy, robustness, and generalization ability. T...

Discovery of Tetrahydroisoquinoline-Based SARS-CoV-2 Helicase Inhibitors with Iterative, Deep Learning-Enhanced Virtual Screening.

Journal of chemical information and modeling
In this study, we pursued a structure-based drug discovery campaign targeting the SARS-CoV-2 helicase through three rounds of virtual screening (VS) enhanced with Artificial Intelligence (AI). The third round incorporated a deep neural network (DNN) ...

Catalyzing change in MID3 through globalization, education, and innovation.

Journal of pharmacokinetics and pharmacodynamics
The landscape of pharmaceutical research and drug development is undergoing a significant evolution, with Model-Informed Drug Discovery and Development (MID3) as a transformative approach to accelerate innovation. Realizing the full potential of MID3...

An open-source screening platform accelerates discovery of drug combinations.

Nature communications
Drug combinations are essential to modern medicine, but their discovery remains slow and inefficient as experimental complexity expands rapidly with each additional drug tested. Although modern liquid handling systems enable complex and highly custom...