AI Medical Compendium Topic:
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Monitoring of Technology Adoption Using Web Content Mining of Location Information and Geographic Information Systems: A Case Study of Digital Breast Tomosynthesis.

JCO clinical cancer informatics
PURPOSE: To our knowledge, integration of Web content mining of publicly available addresses with a geographic information system (GIS) has not been applied to the timely monitoring of medical technology adoption. Here, we explore the diffusion of a ...

SECLAF: a webserver and deep neural network design tool for hierarchical biological sequence classification.

Bioinformatics (Oxford, England)
SUMMARY: Artificial intelligence tools are gaining more and more ground each year in bioinformatics. Learning algorithms can be taught for specific tasks by using the existing enormous biological databases, and the resulting models can be used for th...

ComplexContact: a web server for inter-protein contact prediction using deep learning.

Nucleic acids research
ComplexContact (http://raptorx2.uchicago.edu/ComplexContact/) is a web server for sequence-based interfacial residue-residue contact prediction of a putative protein complex. Interfacial residue-residue contacts are critical for understanding how pro...

WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update.

Nucleic acids research
WEGO (Web Gene Ontology Annotation Plot), created in 2006, is a simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results. Owing largely to the rapid development of high-throughput sequencing and the increas...

PANNZER2: a rapid functional annotation web server.

Nucleic acids research
The unprecedented growth of high-throughput sequencing has led to an ever-widening annotation gap in protein databases. While computational prediction methods are available to make up the shortfall, a majority of public web servers are hindered by pr...

Pharmacokinetic Therapeutic Drug Monitoring of Advagraf in More Than 500 Adult Renal Transplant Patients, Using an Expert System Online.

Therapeutic drug monitoring
BACKGROUND: Immunosuppressant Bayesian dose adjustment (ISBA) is an online expert system, routinely used by approximately 140 transplantation centers in the world for the dose adjustment of immunosuppressive drugs in transplant patients. This system ...

DeepSig: deep learning improves signal peptide detection in proteins.

Bioinformatics (Oxford, England)
MOTIVATION: The identification of signal peptides in protein sequences is an important step toward protein localization and function characterization.

Reactome diagram viewer: data structures and strategies to boost performance.

Bioinformatics (Oxford, England)
MOTIVATION: Reactome is a free, open-source, open-data, curated and peer-reviewed knowledgebase of biomolecular pathways. For web-based pathway visualization, Reactome uses a custom pathway diagram viewer that has been evolved over the past years. He...