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Knowledge Bases

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Transforming the study of organisms: Phenomic data models and knowledge bases.

PLoS computational biology
The rapidly decreasing cost of gene sequencing has resulted in a deluge of genomic data from across the tree of life; however, outside a few model organism databases, genomic data are limited in their scientific impact because they are not accompanie...

From electronic health records to terminology base: A novel knowledge base enrichment approach.

Journal of biomedical informatics
Enriching terminology base (TB) is an important and continuous process, since formal term can be renamed and new term alias emerges all the time. As a potential supplementary for TB enrichment, electronic health record (EHR) is a fundamental source f...

Learning Bayesian networks from demographic and health survey data.

Journal of biomedical informatics
Child mortality from preventable diseases such as pneumonia and diarrhoea in low and middle-income countries remains a serious global challenge. We combine knowledge with available Demographic and Health Survey (DHS) data from India, to construct Cau...

Development of an intelligent knowledge base for identification of accident causes based on Fu et al.'s model.

International journal of occupational safety and ergonomics : JOSE
In this study, an intelligent knowledge base (IKB) is developed based on a model developed by Fu et al. for identification of accident causes, which may play a significant role in preventing accidents. This IKB has been generated using eight sample a...

PharmGKB Tutorial for Pharmacogenomics of Drugs Potentially Used in the Context of COVID-19.

Clinical pharmacology and therapeutics
Pharmacogenomics (PGx) is a key area of precision medicine, which is already being implemented in some health systems and may help guide clinicians toward effective therapies for individual patients. Over the last 2 decades, the Pharmacogenomics Know...

Computational planning of the synthesis of complex natural products.

Nature
Training algorithms to computationally plan multistep organic syntheses has been a challenge for more than 50 years. However, the field has progressed greatly since the development of early programs such as LHASA, for which reaction choices at each s...

lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA.

Scientific data
Long non-coding RNA Knowledgebase (lncRNAKB) is an integrated resource for exploring lncRNA biology in the context of tissue-specificity and disease association. A systematic integration of annotations from six independent databases resulted in 77,19...

Guiding principles for the use of knowledge bases and real-world data in clinical decision support systems: report by an international expert workshop at Karolinska Institutet.

Expert review of clinical pharmacology
INTRODUCTION: Technical and logical breakthroughs have provided new opportunities in medicine to use knowledge bases and large-scale clinical data (real-world) at point-of-care as part of a learning healthcare system to diminish the knowledge-practic...

Marrying Medical Domain Knowledge With Deep Learning on Electronic Health Records: A Deep Visual Analytics Approach.

Journal of medical Internet research
BACKGROUND: Deep learning models have attracted significant interest from health care researchers during the last few decades. There have been many studies that apply deep learning to medical applications and achieve promising results. However, there...

MosaicBase: A Knowledgebase of Postzygotic Mosaic Variants in Noncancer Disease-related and Healthy Human Individuals.

Genomics, proteomics & bioinformatics
Mosaic variants resulting from postzygotic mutations are prevalent in the human genome and play important roles in human diseases. However, except for cancer-related variants, there is no collection of postzygotic mosaic variants in noncancer disease...