AIMC Topic: Machine Learning

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Does BERT need domain adaptation for clinical negation detection?

Journal of the American Medical Informatics Association : JAMIA
INTRODUCTION: Classifying whether concepts in an unstructured clinical text are negated is an important unsolved task. New domain adaptation and transfer learning methods can potentially address this issue.

Classification of Current Procedural Terminology Codes from Electronic Health Record Data Using Machine Learning.

Anesthesiology
BACKGROUND: Accurate anesthesiology procedure code data are essential to quality improvement, research, and reimbursement tasks within anesthesiology practices. Advanced data science techniques, including machine learning and natural language process...

Depression screening using mobile phone usage metadata: a machine learning approach.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Depression is currently the second most significant contributor to non-fatal disease burdens globally. While it is treatable, depression remains undiagnosed in many cases. As mobile phones have now become an integral part of daily life, th...

Using deep learning to associate human genes with age-related diseases.

Bioinformatics (Oxford, England)
MOTIVATION: One way to identify genes possibly associated with ageing is to build a classification model (from the machine learning field) capable of classifying genes as associated with multiple age-related diseases. To build this model, we use a pr...

Formal axioms in biomedical ontologies improve analysis and interpretation of associated data.

Bioinformatics (Oxford, England)
MOTIVATION: Over the past years, significant resources have been invested into formalizing biomedical ontologies. Formal axioms in ontologies have been developed and used to detect and ensure ontology consistency, find unsatisfiable classes, improve ...

Antibody complementarity determining region design using high-capacity machine learning.

Bioinformatics (Oxford, England)
MOTIVATION: The precise targeting of antibodies and other protein therapeutics is required for their proper function and the elimination of deleterious off-target effects. Often the molecular structure of a therapeutic target is unknown and randomize...

Machine Learning Methods for Predicting Human-Adaptive Influenza A Viruses Based on Viral Nucleotide Compositions.

Molecular biology and evolution
Each influenza pandemic was caused at least partly by avian- and/or swine-origin influenza A viruses (IAVs). The timing of and the potential IAVs involved in the next pandemic are currently unpredictable. We aim to build machine learning (ML) models ...

Prediction of mutation effects using a deep temporal convolutional network.

Bioinformatics (Oxford, England)
MOTIVATION: Accurate prediction of the effects of genetic variation is a major goal in biological research. Towards this goal, numerous machine learning models have been developed to learn information from evolutionary sequence data. The most effecti...