AI Medical Compendium Topic

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Deep reinforcement learning based valve scheduling for pollution isolation in water distribution network.

Mathematical biosciences and engineering : MBE
Public water supply facilities are vulnerable to intentional intrusion. In particular, Water Distribution Network (WDN) has become one of the most important public facilities that are prone to be attacked because of its wide coverage and constant ope...

HMMRATAC: a Hidden Markov ModeleR for ATAC-seq.

Nucleic acids research
ATAC-seq has been widely adopted to identify accessible chromatin regions across the genome. However, current data analysis still utilizes approaches initially designed for ChIP-seq or DNase-seq, without considering the transposase digested DNA fragm...

Semi-supervised learning of Hidden Markov Models for biological sequence analysis.

Bioinformatics (Oxford, England)
MOTIVATION: Hidden Markov Models (HMMs) are probabilistic models widely used in applications in computational sequence analysis. HMMs are basically unsupervised models. However, in the most important applications, they are trained in a supervised man...

An account of in silico identification tools of secreted effector proteins in bacteria and future challenges.

Briefings in bioinformatics
Bacterial pathogens secrete numerous effector proteins via six secretion systems, type I to type VI secretion systems, to adapt to new environments or to promote virulence by bacterium-host interactions. Many computational approaches have been used i...

Personalized Pancreatic Cancer Management: A Systematic Review of How Machine Learning Is Supporting Decision-making.

Pancreas
This review critically analyzes how machine learning is being used to support clinical decision-making in the management of potentially resectable pancreatic cancer. Following PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-analyses...

A SEMG-angle model based on HMM for human robot interaction.

Technology and health care : official journal of the European Society for Engineering and Medicine
BACKGROUND: An important part of the rehabilitation process using exoskeleton robots has been the creation of a friendly Human Robot Interaction (HRI) system.

Automatic Human-like Mining and Constructing Reliable Genetic Association Database with Deep Reinforcement Learning.

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
The increasing amount of scientific literature in biological and biomedical science research has created a challenge in continuous and reliable curation of the latest knowledge discovered, and automatic biomedical text-mining has been one of the answ...

Scanpath modeling and classification with hidden Markov models.

Behavior research methods
How people look at visual information reveals fundamental information about them; their interests and their states of mind. Previous studies showed that scanpath, i.e., the sequence of eye movements made by an observer exploring a visual stimulus, ca...

SVM-dependent pairwise HMM: an application to protein pairwise alignments.

Bioinformatics (Oxford, England)
MOTIVATION: Methods able to provide reliable protein alignments are crucial for many bioinformatics applications. In the last years many different algorithms have been developed and various kinds of information, from sequence conservation to secondar...

A transfer learning approach to goodness of pronunciation based automatic mispronunciation detection.

The Journal of the Acoustical Society of America
Goodness of pronunciation (GOP) is the most widely used method for automatic mispronunciation detection. In this paper, a transfer learning approach to GOP based mispronunciation detection when applying maximum F1-score criterion (MFC) training to de...