AIMC Topic: Microscopy, Phase-Contrast

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Investigating the robustness of a deep learning-based method for quantitative phase retrieval from propagation-based x-ray phase contrast measurements under laboratory conditions.

Physics in medicine and biology
Quantitative phase retrieval (QPR) in propagation-based x-ray phase contrast imaging of heterogeneous and structurally complicated objects is challenging under laboratory conditions due to partial spatial coherence and polychromaticity. A deep learni...

Phase Contrast Image Restoration by Formulating Its Imaging Principle and Reversing the Formulation With Deep Neural Networks.

IEEE transactions on medical imaging
Phase contrast microscopy, as a noninvasive imaging technique, has been widely used to monitor the behavior of transparent cells without staining or altering them. Due to the optical principle of the specifically-designed microscope, phase contrast m...

Characterization of drug effects on cell cultures from phase-contrast microscopy images.

Computers in biology and medicine
In this work, we classify chemotherapeutic agents (topoisomerase inhibitors) based on their effect on U-2 OS cells. We use phase-contrast microscopy images, which are faster and easier to obtain than fluorescence images and support live cell imaging....

Accelerated two-dimensional phase-contrast for cardiovascular MRI using deep learning-based reconstruction with complex difference estimation.

Magnetic resonance in medicine
PURPOSE: To develop and validate a deep learning-based reconstruction framework for highly accelerated two-dimensional (2D) phase contrast (PC-MRI) data with accurate and precise quantitative measurements.

Enhanced detection of threat materials by dark-field x-ray imaging combined with deep neural networks.

Nature communications
X-ray imaging has been boosted by the introduction of phase-based methods. Detail visibility is enhanced in phase contrast images, and dark-field images are sensitive to inhomogeneities on a length scale below the system's spatial resolution. Here we...

Patch-Based U-Net Model for Isotropic Quantitative Differential Phase Contrast Imaging.

IEEE transactions on medical imaging
Quantitative differential phase-contrast (qDPC) imaging is a label-free phase retrieval method for weak phase objects using asymmetric illumination. However, qDPC imaging with fewer intensity measurements leads to anisotropic phase distribution in re...

Rapid, label-free classification of tumor-reactive T cell killing with quantitative phase microscopy and machine learning.

Scientific reports
Quantitative phase microscopy (QPM) enables studies of living biological systems without exogenous labels. To increase the utility of QPM, machine-learning methods have been adapted to extract additional information from the quantitative phase data. ...

Machine Learning Assisted Classification of Cell Lines and Cell States on Quantitative Phase Images.

Cells
In this report, we present implementation and validation of machine-learning classifiers for distinguishing between cell types (HeLa, A549, 3T3 cell lines) and states (live, necrosis, apoptosis) based on the analysis of optical parameters derived fro...

Deep learning classification of lipid droplets in quantitative phase images.

PloS one
We report the application of supervised machine learning to the automated classification of lipid droplets in label-free, quantitative-phase images. By comparing various machine learning methods commonly used in biomedical imaging and remote sensing,...

Phase imaging with computational specificity (PICS) for measuring dry mass changes in sub-cellular compartments.

Nature communications
Due to its specificity, fluorescence microscopy has become a quintessential imaging tool in cell biology. However, photobleaching, phototoxicity, and related artifacts continue to limit fluorescence microscopy's utility. Recently, it has been shown t...