AIMC Topic: Microscopy

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Collagen fiber centerline tracking in fibrotic tissue via deep neural networks with variational autoencoder-based synthetic training data generation.

Medical image analysis Sep 12, 2023
The role of fibrillar collagen in the tissue microenvironment is critical in disease contexts ranging from cancers to chronic inflammations, as evidenced by many studies. Quantifying fibrillar collagen organization has become a powerful approach for ...
Liver Microscopy Collagen Fibrillar Collagens Humans Neural Networks, Computer
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Parasitic egg recognition using convolution and attention network.

Scientific reports Sep 2, 2023
Intestinal parasitic infections (IPIs) caused by protozoan and helminth parasites are among the most common infections in humans in low-and-middle-income countries. IPIs affect not only the health status of a country, but also the economic sector. Ov...
Animals Ovum Humans Neural Networks, Computer Intestinal Diseases, Parasitic Parasites Microscopy Datasets as Topic
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iCLOTS: open-source, artificial intelligence-enabled software for analyses of blood cells in microfluidic and microscopy-based assays.

Nature communications Aug 18, 2023
While microscopy-based cellular assays, including microfluidics, have significantly advanced over the last several decades, there has not been concurrent development of widely-accessible techniques to analyze time-dependent microscopy data incorporat...
Microfluidics Microscopy Artificial Intelligence Software Blood Cells
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DBlink: dynamic localization microscopy in super spatiotemporal resolution via deep learning.

Nature methods Jul 27, 2023
Single-molecule localization microscopy (SMLM) has revolutionized biological imaging, improving the spatial resolution of traditional microscopes by an order of magnitude. However, SMLM techniques require long acquisition times, typically a few minut...
Neural Networks, Computer Single Molecule Imaging Deep Learning Cytoskeleton Microscopy
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Digital pathology systems enabling quality patient care.

Genes, chromosomes & cancer Jul 17, 2023
Pathology laboratories are undergoing digital transformations, adopting innovative technologies to enhance patient care. Digital pathology systems impact clinical, education, and research use cases where pathologists use digital technologies to perfo...
Patient Care Microscopy Machine Learning Image Processing, Computer-Assisted Humans
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Whole Slide Imaging Technology and Its Applications: Current and Emerging Perspectives.

International journal of surgical pathology Jul 12, 2023
. Whole slide imaging (WSI) represents a paradigm shift in pathology, serving as a necessary first step for a wide array of digital tools to enter the field. It utilizes virtual microscopy wherein glass slides are converted into digital slides and ar...
Humans Artificial Intelligence Microscopy Reproducibility of Results Pathology, Surgical Image Processing, Computer-Assisted
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WormSwin: Instance segmentation of C. elegans using vision transformer.

Scientific reports Jul 7, 2023
The possibility to extract motion of a single organism from video recordings at a large-scale provides means for the quantitative study of its behavior, both individual and collective. This task is particularly difficult for organisms that interact w...
Behavior, Animal Caenorhabditis elegans Video Recording Neural Networks, Computer Animals Image Processing, Computer-Assisted Microscopy
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AutoFibroNet: A deep learning and multi-photon microscopy-derived automated network for liver fibrosis quantification in MAFLD.

Alimentary pharmacology & therapeutics Jul 4, 2023
BACKGROUND: Liver fibrosis is the strongest histological risk factor for liver-related complications and mortality in metabolic dysfunction-associated fatty liver disease (MAFLD). Second harmonic generation/two-photon excitation fluorescence (SHG/TPE...
Non-alcoholic Fatty Liver Disease Microscopy Liver Biopsy Humans Adult Deep Learning Liver Cirrhosis
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DeXtrusion: automatic recognition of epithelial cell extrusion through machine learning in vivo.

Development (Cambridge, England) Jun 30, 2023
Accurately counting and localising cellular events from movies is an important bottleneck of high-content tissue/embryo live imaging. Here, we propose a new methodology based on deep learning that allows automatic detection of cellular events and the...
Cell Death Machine Learning Microscopy Epithelial Cells Neural Networks, Computer
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Ultrasound Localization Microscopy Using Deep Neural Network.

IEEE transactions on ultrasonics, ferroelectrics, and frequency control Jun 29, 2023
Noninvasive imaging of microvascular structures in deep tissues provides morphological and functional information for clinical diagnosis and monitoring. Ultrasound localization microscopy (ULM) is an emerging imaging technique that can generate micro...
Microbubbles Microscopy Neural Networks, Computer Ultrasonography
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