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Natural Language Processing

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ICDXML: enhancing ICD coding with probabilistic label trees and dynamic semantic representations.

Scientific reports
Accurately assigning standardized diagnosis and procedure codes from clinical text is crucial for healthcare applications. However, this remains challenging due to the complexity of medical language. This paper proposes a novel model that incorporate...

An improved data augmentation approach and its application in medical named entity recognition.

BMC medical informatics and decision making
Performing data augmentation in medical named entity recognition (NER) is crucial due to the unique challenges posed by this field. Medical data is characterized by high acquisition costs, specialized terminology, imbalanced distributions, and limite...

Improving the quality of Persian clinical text with a novel spelling correction system.

BMC medical informatics and decision making
BACKGROUND: The accuracy of spelling in Electronic Health Records (EHRs) is a critical factor for efficient clinical care, research, and ensuring patient safety. The Persian language, with its abundant vocabulary and complex characteristics, poses un...

Advancing plant biology through deep learning-powered natural language processing.

Plant cell reports
The application of deep learning methods, specifically the utilization of Large Language Models (LLMs), in the field of plant biology holds significant promise for generating novel knowledge on plant cell systems. The LLM framework exhibits exception...

Overview of computational methods in taphonomy based on the combination of bibliometric analysis and natural language.

Anais da Academia Brasileira de Ciencias
Artificial intelligence tools are new in taphonomy and are growing fast. They are being used mainly to investigate bone surface marks. In order to investigate this subject, a bibliometric study was made to understand the growing rate of this intersec...

Assessing dimensions of thought disorder with large language models: The tradeoff of accuracy and consistency.

Psychiatry research
Natural Language Processing (NLP) methods have shown promise for the assessment of formal thought disorder, a hallmark feature of schizophrenia in which disturbances to the structure, organization, or coherence of thought can manifest as disordered o...

A pre-trained language model for emergency department intervention prediction using routine physiological data and clinical narratives.

International journal of medical informatics
INTRODUCTION: The urgency and complexity of emergency room (ER) settings require precise and swift decision-making processes for patient care. Ensuring the timely execution of critical examinations and interventions is vital for reducing diagnostic e...

MIGP: Metapath Integrated Graph Prompt Neural Network.

Neural networks : the official journal of the International Neural Network Society
Graph neural networks (GNNs) leveraging metapaths have garnered extensive utilization. Nevertheless, the escalating parameters and data corpus within graph pre-training models incur mounting training costs. Consequently, GNN models encounter hurdles ...

Botulinum Toxin Type A (BoNT-A) Use for Post-Stroke Spasticity: A Multicenter Study Using Natural Language Processing and Machine Learning.

Toxins
We conducted a multicenter and retrospective study to describe the use of botulinum toxin type A (BoNT-A) to treat post-stroke spasticity (PSS). Data were extracted from free-text in electronic health records (EHRs) in five Spanish hospitals. We incl...

BrainNPT: Pre-Training Transformer Networks for Brain Network Classification.

IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society
Deep learning methods have advanced quickly in brain imaging analysis over the past few years, but they are usually restricted by the limited labeled data. Pre-trained model on unlabeled data has presented promising improvement in feature learning in...