AIMC Topic: RNA, Long Noncoding

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A deep recurrent neural network discovers complex biological rules to decipher RNA protein-coding potential.

Nucleic acids research
The current deluge of newly identified RNA transcripts presents a singular opportunity for improved assessment of coding potential, a cornerstone of genome annotation, and for machine-driven discovery of biological knowledge. While traditional, featu...

miRandola 2017: a curated knowledge base of non-invasive biomarkers.

Nucleic acids research
miRandola (http://mirandola.iit.cnr.it/) is a database of extracellular non-coding RNAs (ncRNAs) that was initially published in 2012, foreseeing the relevance of ncRNAs as non-invasive biomarkers. An increasing amount of experimental evidence shows ...

FARNA: knowledgebase of inferred functions of non-coding RNA transcripts.

Nucleic acids research
Non-coding RNA (ncRNA) genes play a major role in control of heterogeneous cellular behavior. Yet, their functions are largely uncharacterized. Current available databases lack in-depth information of ncRNA functions across spectrum of various cells/...

FMLNCSIM: fuzzy measure-based lncRNA functional similarity calculation model.

Oncotarget
Accumulating experimental studies have indicated the influence of lncRNAs on various critical biological processes as well as disease development and progression. Calculating lncRNA functional similarity is of high value in inferring lncRNA functions...

LncRNA ontology: inferring lncRNA functions based on chromatin states and expression patterns.

Oncotarget
Accumulating evidences suggest that long non-coding RNAs (lncRNAs) perform important functions. Genome-wide chromatin-states area rich source of information about cellular state, yielding insights beyond what is typically obtained by transcriptome pr...