AIMC Topic: Software

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Improved protein contact predictions with the MetaPSICOV2 server in CASP12.

Proteins
In this paper, we present the results for the MetaPSICOV2 contact prediction server in the CASP12 community experiment (http://predictioncenter.org). Over the 35 assessed Free Modelling target domains the MetaPSICOV2 server achieved a mean precision ...

Distant Supervision with Transductive Learning for Adverse Drug Reaction Identification from Electronic Medical Records.

Journal of healthcare engineering
Information extraction and knowledge discovery regarding adverse drug reaction (ADR) from large-scale clinical texts are very useful and needy processes. Two major difficulties of this task are the lack of domain experts for labeling examples and int...

Correcting Classifiers for Sample Selection Bias in Two-Phase Case-Control Studies.

Computational and mathematical methods in medicine
Epidemiological studies often utilize stratified data in which rare outcomes or exposures are artificially enriched. This design can increase precision in association tests but distorts predictions when applying classifiers on nonstratified data. Sev...

American Sign Language Alphabet Recognition Using a Neuromorphic Sensor and an Artificial Neural Network.

Sensors (Basel, Switzerland)
This paper reports the design and analysis of an American Sign Language (ASL) alphabet translation system implemented in hardware using a Field-Programmable Gate Array. The system process consists of three stages, the first being the communication wi...

Predicting clinical outcomes from large scale cancer genomic profiles with deep survival models.

Scientific reports
Translating the vast data generated by genomic platforms into accurate predictions of clinical outcomes is a fundamental challenge in genomic medicine. Many prediction methods face limitations in learning from the high-dimensional profiles generated ...

Computerized Bone Age Estimation Using Deep Learning Based Program: Evaluation of the Accuracy and Efficiency.

AJR. American journal of roentgenology
OBJECTIVE: The purpose of this study is to evaluate the accuracy and efficiency of a new automatic software system for bone age assessment and to validate its feasibility in clinical practice.

Analysis of deep learning methods for blind protein contact prediction in CASP12.

Proteins
Here we present the results of protein contact prediction achieved in CASP12 by our RaptorX-Contact server, which is an early implementation of our deep learning method for contact prediction. On a set of 38 free-modeling target domains with a median...

MIT-Skywalker: considerations on the Design of a Body Weight Support System.

Journal of neuroengineering and rehabilitation
BACKGROUND: To provide body weight support during walking and balance training, one can employ two distinct embodiments: support through a harness hanging from an overhead system or support through a saddle/seat type. This paper presents a comparison...

Ontology-based specification, identification and analysis of perioperative risks.

Journal of biomedical semantics
BACKGROUND: Medical personnel in hospitals often works under great physical and mental strain. In medical decision-making, errors can never be completely ruled out. Several studies have shown that between 50 and 60% of adverse events could have been ...

Machine Learning Using Combined Structural and Chemical Descriptors for Prediction of Methane Adsorption Performance of Metal Organic Frameworks (MOFs).

ACS combinatorial science
Using molecular simulation for adsorbent screening is computationally expensive and thus prohibitive to materials discovery. Machine learning (ML) algorithms trained on fundamental material properties can potentially provide quick and accurate method...