AIMC Topic: Software

Clear Filters Showing 61 to 70 of 3507 articles

TopEC: prediction of Enzyme Commission classes by 3D graph neural networks and localized 3D protein descriptor.

Nature communications Mar 20, 2025
Tools available for inferring enzyme function from general sequence, fold, or evolutionary information are generally successful. However, they can lead to misclassification if a deviation in local structural features influences the function. Here, we...
Software Binding Sites Algorithms Computational Biology Enzymes Protein Conformation Neural Networks, Computer Graph Neural Networks
View on PubMed DOI

CacPred: a cascaded convolutional neural network for TF-DNA binding prediction.

BMC genomics Mar 18, 2025
BACKGROUND: Transcription factors (TFs) regulate the genes' expression by binding to DNA sequences. Aligned TFBSs of the same TF are seen as cis-regulatory motifs, and substantial computational efforts have been invested to find motifs. In recent yea...
DNA Neural Networks, Computer Software Binding Sites Computational Biology Convolutional Neural Networks Chromatin Immunoprecipitation Sequencing Transcription Factors Protein Binding Algorithms
View on PubMed DOI

Real time artificial intelligence assisted carotid artery stenting: a preliminary experience.

Journal of neurointerventional surgery Mar 17, 2025
BACKGROUND: Neurointerventionalists must pay close attention to multiple devices on multiple screens simultaneously, which can lead to oversights and complications. Artificial intelligence (AI) has potential application in recognizing and monitoring ...
Software Female Aged Humans Artificial Intelligence Stents Endovascular Procedures Carotid Stenosis Male Middle Aged Aged, 80 and over
View on PubMed DOI

A malware classification method based on directed API call relationships.

PloS one Mar 17, 2025
In response to the growing complexity of network threats, researchers are increasingly turning to machine learning and deep learning techniques to develop advanced models for malware detection. Many existing methods that utilize Application Programmi...
Humans Neural Networks, Computer Machine Learning Software Deep Learning Computer Security Algorithms
View on PubMed DOI

Comparison of ChatGPT-4o, Google Gemini 1.5 Pro, Microsoft Copilot Pro, and Ophthalmologists in the management of uveitis and ocular inflammation: A comparative study of large language models.

Journal francais d'ophtalmologie Mar 13, 2025
PURPOSE: The aim of this study was to compare the latest large language models (LLMs) ChatGPT-4o, Google Gemini 1.5 Pro and Microsoft Copilot Pro developed by three different companies, with each other and with a group of ophthalmologists, to reveal ...
Inflammation Large Language Models Humans Uveitis Language Surveys and Questionnaires Software Programming Languages Ophthalmologists Ophthalmology Generative Artificial Intelligence Internet
View on PubMed DOI

Validation of OncoOrigin: An Integrative AI Tool for Primary Cancer Site Prediction with Graphical User Interface to Facilitate Clinical Application.

International journal of molecular sciences Mar 13, 2025
Cancers of unknown primary (CUPs) represent a significant diagnostic and therapeutic challenge in the field of oncology. Due to the limitations of current diagnostic tools in these cases, novel approaches must be brought forward to improve treatment ...
Neoplasms User-Computer Interface Computer Simulation Female Male Machine Learning Software Humans
View on PubMed DOI

MuCST: restoring and integrating heterogeneous morphology images and spatial transcriptomics data with contrastive learning.

Genome medicine Mar 13, 2025
Spatially resolved transcriptomics (SRT) simultaneously measure spatial location, histology images, and transcriptional profiles of cells or regions in undissociated tissues. Integrative analysis of multi-modal SRT data holds immense potential for un...
Image Processing, Computer-Assisted Computational Biology Humans Machine Learning Gene Expression Profiling Transcriptome Software
View on PubMed DOI

RBPsuite 2.0: an updated RNA-protein binding site prediction suite with high coverage on species and proteins based on deep learning.

BMC biology Mar 11, 2025
BACKGROUND: RNA-binding proteins (RBPs) play crucial roles in many biological processes, and computationally identifying RNA-RBP interactions provides insights into the biological mechanism of diseases associated with RBPs.
Humans Software Deep Learning RNA Binding Sites RNA, Circular Computational Biology RNA-Binding Proteins
View on PubMed DOI

BacTermFinder: a comprehensive and general bacterial terminator finder using a CNN ensemble.

NAR genomics and bioinformatics Mar 8, 2025
A terminator is a DNA region that ends the transcription process. Currently, multiple computational tools are available for predicting bacterial terminators. However, these methods are specialized for certain bacteria or terminator type (i.e. intrins...
Bacteria Neural Networks, Computer Computational Biology Software Terminator Regions, Genetic
View on PubMed DOI

FIORA: Local neighborhood-based prediction of compound mass spectra from single fragmentation events.

Nature communications Mar 7, 2025
Non-targeted metabolomics holds great promise for advancing precision medicine and biomarker discovery. However, identifying compounds from tandem mass spectra remains a challenging task due to the incomplete nature of spectral reference libraries. A...
Neural Networks, Computer Software Metabolomics Tandem Mass Spectrometry Algorithms
View on PubMed DOI
Popular Topics
Recent Journals