AIMC Topic: Software

Clear Filters Showing 61 to 70 of 3675 articles

GeneRAIN: multifaceted representation of genes via deep learning of gene expression networks.

Genome biology
We develop GeneRAIN, a suite of Transformer-based models that learn gene expression relationships from 410 K human bulk RNA-seq samples. Featuring a novel Binning-By-Gene normalization technique, our models capture diverse biological information beyo...

Experimental exploration of artificial intelligence and ADAMS simulation technology in the teaching of vertical hoop upward throw in rhythmic gymnastics.

PloS one
Currently, rhythmic gymnastics teaching mainly focuses on traditional techniques and cannot break through issues such as blind spots in the coordination training between apparatus and body. In the academic field, research results are still dominated ...

Gaussian process modelling of infectious diseases using the Greta software package and GPUs.

Journal of theoretical biology
Gaussian process are a widely-used statistical tool for conducting non-parametric inference in applied sciences, with many computational packages available to fit to data and predict future observations. We study the use of the Greta software for Bay...

MassVision: An Open-Source End-to-End Platform for AI-Driven Mass Spectrometry Imaging Analysis.

Analytical chemistry
Mass spectrometry imaging (MSI) combines spatial and spectral data to reveal detailed molecular compositions within biological samples. Despite their immense potential, MSI workflows are hindered by the complexity and high dimensionality of the data,...

A comprehensive benchmarking of adaptive sampling tools for nanopore sequencing.

Genome biology
BACKGROUND: Adaptive sampling is an emerging technology to enrich target reads while depleting unwanted reads during real-time nanopore sequencing. The application of different algorithms has spawned various tools for the determination of read reject...

Proposition of a new, minimally-invasive, software smartphone device to predict sleep apnea and its severity.

Sleep & breathing = Schlaf & Atmung
PURPOSE: obstructive sleep apnea is underdiagnosed due to limited access to polysomnography (PSG). We aimed to assess the performances of Apneal, an application recording sound and movements thanks to a smartphone's microphone, accelerometer and gyro...

ProteinWeaver: A webtool to visualize ontology-annotated protein networks.

PloS one
Molecular interaction networks are a vital tool for studying biological systems. While many tools exist that visualize a protein or a pathway within a network, no tool provides the ability for a researcher to consider a protein's position in a networ...

PhyCysID: Plant Cystatin Protein Prediction by an Artificial Intelligence Approach.

Journal of chemical information and modeling
Phytocystatins are proteinaceous inhibitors found in plants that competitively target various classes of cysteine proteinases, including papain-like enzymes, cathepsins, and legumains. Based on structural characteristics and gene organization, phytoc...

CELLM: Bridging Natural Language Processing and Synthetic Genetic Circuit Design with AI.

ACS synthetic biology
The complexity of the genetic circuit design limits accessibility and efficiency in synthetic biology. This study presents an integrated system that combines Cello software with large language models (DeepSeek-R1, Phi-4) and the LangChain framework i...

Multilayered SDN security with MAC authentication and GAN-based intrusion detection.

PloS one
Computer networks are highly vulnerable to cybersecurity intrusions. Likewise, software-defined networks (SDN), which enable 5G users to broadcast sensitive data, have become a primary target for vulnerability. To protect the network security against...