AIMC Topic: Vocabulary, Controlled

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Artificial Intelligence in Medicine AIME 2013.

Artificial intelligence in medicine Jul 30, 2015
Computer Communication Networks Data Mining Humans Vocabulary, Controlled Artificial Intelligence Medicine Information Systems Image Processing, Computer-Assisted Patient Participation
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Automated systems for the de-identification of longitudinal clinical narratives: Overview of 2014 i2b2/UTHealth shared task Track 1.

Journal of biomedical informatics Jul 28, 2015
The 2014 i2b2/UTHealth Natural Language Processing (NLP) shared task featured four tracks. The first of these was the de-identification track focused on identifying protected health information (PHI) in longitudinal clinical narratives. The longitudi...
Data Mining Longitudinal Studies Computer Security Electronic Health Records Pattern Recognition, Automated Narration Cohort Studies Vocabulary, Controlled Natural Language Processing Confidentiality
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Learning the Structure of Biomedical Relationships from Unstructured Text.

PLoS computational biology Jul 28, 2015
The published biomedical research literature encompasses most of our understanding of how drugs interact with gene products to produce physiological responses (phenotypes). Unfortunately, this information is distributed throughout the unstructured te...
Data Mining MEDLINE Pattern Recognition, Automated Vocabulary, Controlled Algorithms Pharmacogenetics Natural Language Processing Drug Interactions Machine Learning
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Identifying risk factors for heart disease over time: Overview of 2014 i2b2/UTHealth shared task Track 2.

Journal of biomedical informatics Jul 22, 2015
The second track of the 2014 i2b2/UTHealth natural language processing shared task focused on identifying medical risk factors related to Coronary Artery Disease (CAD) in the narratives of longitudinal medical records of diabetic patients. The risk f...
Humans Electronic Health Records Female Aged Risk Assessment Comorbidity Incidence Male Middle Aged Computer Security Vocabulary, Controlled Diabetes Complications Coronary Artery Disease Cohort Studies Boston Confidentiality Longitudinal Studies Data Mining Narration Pattern Recognition, Automated Natural Language Processing
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Combining knowledge- and data-driven methods for de-identification of clinical narratives.

Journal of biomedical informatics Jul 22, 2015
A recent promise to access unstructured clinical data from electronic health records on large-scale has revitalized the interest in automated de-identification of clinical notes, which includes the identification of mentions of Protected Health Infor...
United Kingdom Pattern Recognition, Automated Computer Security Vocabulary, Controlled Narration Natural Language Processing Confidentiality Data Mining Electronic Health Records Cohort Studies Models, Statistical Machine Learning Computer Simulation
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Agile text mining for the 2014 i2b2/UTHealth Cardiac risk factors challenge.

Journal of biomedical informatics Jul 22, 2015
This paper describes the use of an agile text mining platform (Linguamatics' Interactive Information Extraction Platform, I2E) to extract document-level cardiac risk factors in patient records as defined in the i2b2/UTHealth 2014 challenge. The appro...
Natural Language Processing Confidentiality Data Mining United Kingdom Incidence Cohort Studies Longitudinal Studies Narration Pattern Recognition, Automated Computer Security Vocabulary, Controlled Diabetes Complications Humans Electronic Health Records Female Aged Middle Aged Risk Assessment Comorbidity Male Cardiovascular Diseases
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Challenges in clinical natural language processing for automated disorder normalization.

Journal of biomedical informatics Jul 14, 2015
BACKGROUND: Identifying key variables such as disorders within the clinical narratives in electronic health records has wide-ranging applications within clinical practice and biomedical research. Previous research has demonstrated reduced performance...
Humans Machine Learning Software Electronic Health Records Narration Natural Language Processing Vocabulary, Controlled
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ProCon - PROteomics CONversion tool.

Journal of proteomics Jul 13, 2015
With the growing amount of experimental data produced in proteomics experiments and the requirements/recommendations of journals in the proteomics field to publicly make available data described in papers, a need for long-term storage of proteomics d...
Information Storage and Retrieval Vocabulary, Controlled Software Design Database Management Systems Proteomics Proteome Databases, Protein Natural Language Processing Software Algorithms
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NLP based congestive heart failure case finding: A prospective analysis on statewide electronic medical records.

International journal of medical informatics Jul 2, 2015
BACKGROUND: In order to proactively manage congestive heart failure (CHF) patients, an effective CHF case finding algorithm is required to process both structured and unstructured electronic medical records (EMR) to allow complementary and cost-effic...
Vocabulary, Controlled Maine Natural Language Processing Humans Heart Failure Algorithms Data Mining Prospective Studies Pattern Recognition, Automated Sensitivity and Specificity Electronic Health Records Prevalence Reproducibility of Results Decision Support Systems, Clinical
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Combining glass box and black box evaluations in the identification of heart disease risk factors and their temporal relations from clinical records.

Journal of biomedical informatics Jul 2, 2015
BACKGROUND: The determination of risk factors and their temporal relations in natural language patient records is a complex task which has been addressed in the i2b2/UTHealth 2014 shared task. In this context, in most systems it was broadly decompose...
Comorbidity Incidence Electronic Health Records Cohort Studies Female Longitudinal Studies Aged Humans Male Pattern Recognition, Automated Algorithms Cardiovascular Diseases France Narration Middle Aged Computer Security Risk Assessment Natural Language Processing Vocabulary, Controlled Diabetes Complications Confidentiality Data Mining
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