AIMC Topic: Workflow

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APLUS: A Python library for usefulness simulations of machine learning models in healthcare.

Journal of biomedical informatics
Despite the creation of thousands of machine learning (ML) models, the promise of improving patient care with ML remains largely unrealized. Adoption into clinical practice is lagging, in large part due to disconnects between how ML practitioners eva...

Data-Driven and Machine Learning-Based Framework for Image-Guided Single-Cell Mass Spectrometry.

Journal of proteome research
Improved throughput of analysis and lowered limits of detection have allowed single-cell chemical analysis to go beyond the detection of a few molecules in such volume-limited samples, enabling researchers to characterize different functional states ...

Machine Learning-Enabled NIR Spectroscopy. Part 2: Workflow for Selecting a Subset of Samples from Publicly Accessible Data.

AAPS PharmSciTech
An increasingly large dataset of pharmaceutics disciplines is frequently challenging to comprehend. Since machine learning needs high-quality data sets, the open-source dataset can be a place to start. This work presents a systematic method to choose...

A Layered, Hybrid Machine Learning Analytic Workflow for Mouse Risk Assessment Behavior.

eNeuro
Accurate and efficient quantification of animal behavior facilitates the understanding of the brain. An emerging approach within machine learning (ML) field is to combine multiple ML-based algorithms to quantify animal behavior. These so-called hybri...

A Deep Learning Workflow for Mass-Forming Intrahepatic Cholangiocarcinoma and Hepatocellular Carcinoma Classification Based on MRI.

Current oncology (Toronto, Ont.)
OBJECTIVE: Precise classification of mass-forming intrahepatic cholangiocarcinoma (MF-ICC) and hepatocellular carcinoma (HCC) based on magnetic resonance imaging (MRI) is crucial for personalized treatment strategy. The purpose of the present study w...

Developing an integrated approach based on geographic object-based image analysis and convolutional neural network for volcanic and glacial landforms mapping.

Scientific reports
Rapid detection and mapping of landforms are crucially important to improve our understanding of past and presently active processes across the earth, especially, in complex and dynamic volcanoes. Traditional landform modeling approaches are labor-in...

Prospective risk analysis of the online-adaptive artificial intelligence-driven workflow using the Ethos treatment system.

Zeitschrift fur medizinische Physik
PURPOSE: The recently introduced Varian Ethos system allows adjusting radiotherapy treatment plans to anatomical changes on a daily basis. The system uses artificial intelligence to speed up the process of creating adapted plans, comes with its own s...

BASIN: A Semi-automatic Workflow, with Machine Learning Segmentation, for Objective Statistical Analysis of Biomedical and Biofilm Image Datasets.

Journal of molecular biology
Micrograph comparison remains useful in bioscience. This technology provides researchers with a quick snapshot of experimental conditions. But sometimes a two- condition comparison relies on researchers' eyes to draw conclusions. Our Bioimage Analysi...

microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation.

PloS one
In biotechnology, cell growth is one of the most important properties for the characterization and optimization of microbial cultures. Novel live-cell imaging methods are leading to an ever better understanding of cell cultures and their development....

Protocol to explain graph neural network predictions using an edge-centric Shapley value-based approach.

STAR protocols
Here we present EdgeSHAPer, a workflow for explaining graph neural networks by approximating Shapley values using Monte Carlo sampling. In this protocol, we describe steps to execute Python scripts for a chemical dataset from the original publication...