Infectious Disease

Bacterial Infection

Latest AI and machine learning research in bacterial infection for healthcare professionals.

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BacteReason: A Reasoning Model for Antimicrobial Resistance Prediction

The rapid global spread of antimicrobial resistance (AMR) has placed unprecedented pressure on clini...

Multi-omic data fusion reveals the in vivo enzyme kinetics of Vibrio natriegens at the genome-scale

Vibrio natriegens is a halophilic, Gram-negative marine bacterium that is increasingly used in metab...

High-dimensional Characterization of Genome-Environment Fitness Landscapes in Klebsiella pneumoniae

Background Bacterial fitness is shaped by interactions between genome variation and environmental co...

13C flux ratio analysis with FRAPPPE reveals differences in metabolic fluxes between gut Bacteroidota and Escherichia coli

Gut bacteria shape the metabolism of their host and play an important role in human health. However,...

Beyond the annotated: protein foundation models enable robust prediction of microbial root competence

Background Root competence, the ability of soil bacteria to establish and grow on plant roots, is a ...

Protein-level prediction of Klebsiella phage adsorption identifies conserved receptor-binding motifs.

Bacteriophage therapy offers a potential route to treat antibiotic-resistant Klebsiella pneumoniae i...

Design of DNA Aptamers for Lyme disease Diagnosis Combining experimental and numerical approaches

Aptamers are single stranded DNA or RNA molecules selected for their high affinity and specificity t...

Molecular Methods to Detect Vibrio cholerae and Associated Bacteriophages among Diarrheal Patients in Bangladesh

Molecular diagnostics to detect Vibrio cholerae (Vc) may be negatively impacted by pathogen-specific...

Deep Learning-Based Structure Modeling of the Treponema pallidum Proteome: Insights into Pathogenesis and Syphilis Vaccine Development

Treponema pallidum ssp. pallidum, the causative agent of syphilis, has a small proteome and encompas...

Species-specific transformer models of bacterial gene order and content for genomic surveillance tasks

Transformer models enable functionally meaningful representation of complex biological data, such as...

GenPept-Curated-2025: A Benchmark Dataset for Antimicrobial Peptide Prediction with Homology-Controlled Partitioning

Antimicrobial peptides (AMPs) are promising therapeutic candidates against rising antimicrobial resi...

Learning to count small and clustered objects with application to bacterial colonies

Automated bacterial colony counting from images is an important technique to obtain data required fo...

Machine Learning applied to MALDI-TOF data in a clinical setting: a systematic review

Bacterial identification, antimicrobial resistance prediction, and strain typification are critical ...

CBAM-Enhanced DenseNet121 for Multi-Class Chest X-Ray Classification with Grad-CAM Explainability

Pneumonia remains a leading cause of childhood mortality worldwide, with a heavy burden in low-resou...

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